CK934935

Overview
NameCK934935
Unique NameCK934935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9325 contig Csv1_Contig9325:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934935 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.373e-18
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  394 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMATRGNKPKCP 576
            DC   CAARC+  SRP +C RAC TCC RC CVPPGT GN E C  CY  + T GNK KCP
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of CK934935 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.075e-17
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  394 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMATRGNKPKCP 576
            DC   C ARC+   RP +C RAC TCC RC CVPPGTYGN +KC +CY  + T G + KCP
Sbjct:   39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
BLAST of CK934935 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  394 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMATRGNKPKCP 576
            DC   C  RC   SRPN+C RAC +CC RC CVPPGT GN   C  CY  + TRG + KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of CK934935 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.641e-12
Identity = 31/61 (50.82%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  394 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMATRGNKPKCP 576
            DC   C  RC   SR  +C RAC +CC RC CVPPGT GN   C  CY  + T G + KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
BLAST of CK934935 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 29/61 (47.54%), Postives = 33/61 (54.10%), Query Frame = 1
Query:  394 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMATRGNKPKCP 576
            DC P C  RC A S    C   C  CC  C CVP G YGN++ C  CY +  T+  KPKCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSC-PCYNNWKTQEGKPKCP 96          
BLAST of CK934935 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 28/62 (45.16%), Postives = 34/62 (54.84%), Query Frame = 1
Query:  391 KDCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMATRGNKPKCP 576
            +DC P C  RC   S    C   C  CC +C CVP GTYGN++ C  CY +  T+   PKCP
Sbjct:   52 QDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSC-PCYNNWKTKRGGPKCP 112          
The following BLAST results are available for this feature:
BLAST of CK934935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SNAK2_SOLTU9.373e-1862.30Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH6.075e-1757.38Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH5.686e-1555.74Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH2.641e-1250.82Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
RSI1_SOLLC2.236e-1147.54Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC6.506e-1145.16Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004225_A10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934935 ID=CK934935; Name=CK934935; organism=Citrus sinensis; type=EST; length=822bp
GGGGGGCACCAACCAGGGACTAGCTAGCTTCTCAAACTTTCTTCTTGGTT
CCTTTCGGCTGGGTTCTGTCTTCCAATGGCTTTCAGAGCTGCTCCGCTTC
TGTTGGCCACTTTGCTTTTAGTCTCTACAAGTGTTTTATCCAACAATGAG
GAGGAATATCTGCTAGAAAAGGATACTACTTACCCCAAAACCCCAGTACC
TGCACCAGCTCCTACTAAGGCTCCAGTTAAGCCAATCACTCCACCACCAG
TAGTGAGGCCACCCACCACTTATCCACCACCAGTGAAGCCACCCACAACC
ACTCCCCCACCAGTGACCCCACCTAAAACAGCTCCTGCCCCCCAAGTTCC
CTCTCCGGCATCTCCACCAATGCCTATTGTGAGGTCAAACAAAGATTGCA
TCCCACTATGTGCAGCAAGATGCAAGGCACACTCAAGGCCAAACGTTTGT
GGAAGAGCTTGCACTACATGCTGTGTTAGGTGCAAATGTGTTCCACCAGG
AACTTATGGCAACAGAGAGAAGTGTGGCAAGTGCTACACTGATATGGCTA
CTCGGGGCAATAAACCCAAGTGCCCTTAAGTTATAAATATTAGCATCTGT
TGAAATTTTATGTTAGCTTAAGTTGACCTGCAATAAGTGTTAAAGAGTAA
ATGGTTTTCTAGTGACTTTCTGTGTCACTGCAAGATTGTGCATGTAGTGT
GTTAAGCCATGGCTGATCTACTTCTGTTAGTTTCTGCTGAAATTTCCCTT
GTTAATCCTAGACATTATAAAGTAGTATATTTTCAGTTTCATTGCAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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