CK934936

Overview
NameCK934936
Unique NameCK934936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934936_ssr10 microsatellite CK934936_ssr10:10..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK934936 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.101e-25
Identity = 68/230 (29.57%), Postives = 109/230 (47.39%), Query Frame = 2 
Query:   98 LLTMKDLSFYVGVIGSIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYG--ITRPGSYLVATVNGFGILVEAVYVTLFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLALEGE-ARIDAIGFMCAGLNIIMYASPLSAMV-----------------------------------------PNGTGFLLGTAQLVLYAIYRNAKPSKNAANSME 655
            ++  K + F +GVIG++IS  +F AP +TFWRI K +S EEF  +PY+ T++N  LW +YG  +    S LV+T+NG G+++E  YV ++ +Y   K    +  + F  L+V  + A I  T  AL+G+  +   +G +C   NI MY +P  A++                                          NG G  L  +QL++Y +Y  + P +      E
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMYYKSTPKEKTVKPSE 230
The following BLAST results are available for this feature:
BLAST of CK934936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPG1_ARATH3.101e-2529.57Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004225_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934936 ID=CK934936; Name=CK934936; organism=Citrus sinensis; type=EST; length=897bp
GGGGGTTATTCTCTCTCTCTCTCTCTCTCTCTGCTTAATTTTCATCAAGC
TTTCTTGATATACAAATTAATCTAAAGACCATTTTTTCTTTTCTCTTCTT
CTAACCATGAAGGATTTGAGTTTTTATGTTGGAGTAATAGGCAGCATAAT
CTCAGTGCTCATGTTTCTTGCTCCAGTTAGAACATTTTGGAGAATCATAA
AGCATCGATCGACTGAGGAATTTCAGAGCCTCCCCTATATCTGCACTTTG
TTAAATTCATCTCTGTGGACTTATTACGGAATCACAAGACCTGGAAGCTA
TCTTGTCGCCACTGTAAATGGCTTTGGCATTTTAGTTGAAGCTGTTTATG
TAACCTTATTTTTCATATATGCTCCAACAAAAGCAATGAGGGCTAAAACT
GCGATTATTTTCGGCATACTGGATGTGGGATTTTTAGGAGCAGCAATTGC
AGCGACTCGTTTGGCATTAGAAGGAGAAGCTCGCATTGATGCCATAGGGT
TTATGTGTGCCGGCCTCAATATTATTATGTATGCATCGCCTCTATCCGCC
ATGGTACCAAATGGGACGGGATTTTTGCTGGGAACAGCTCAGTTGGTGCT
CTATGCAATCTACAGAAATGCAAAGCCATCAAAGAATGCTGCGAATTCAA
TGGAAGAAGGAGCACAACACGAACCGCTAATTATCTCTTGAAGGGCAAAG
ATAAAACTCTAGAACTTAAGTCGTTCGTTCTTCATTTTCTTCAATTTTCA
TACTCTCTTACGCAAACGATAGGGAGGTGATATAATACAATCGATCATAG
ATATAGCTTGTGTGTAATTATTCAATCACCGTTCGCTTGTTGTTTTGAGC
TTGTTCATTAAAGGGGGTGGAGTATGTGATTGTATTCGTAGCGTATT
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