CK934946

Overview
NameCK934946
Unique NameCK934946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK934946 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.094e-68
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2 
Query:  137 IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDDIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFLAGNTKQEVCDFKVKGSWTERSCVVYAGESNTIVAQMHKKETVGSYFLNKDRFAVTVYPNIDYAFIVALIVILDDINGDNTA 706
            ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N +++FKVKE  F LHDKR LLD +G PVVT+ EK+ S H++  VFRG STD +DLL+TV  SS+LQLKT L+VFL  N  ++ CDF+VKGSW ERSCVVYAGES+ IVAQMH+K TV S FL KD F+VTVYPN+DYAFI +L+VILDD+N ++ A
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216
The following BLAST results are available for this feature:
BLAST of CK934946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH2.094e-6862.63UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004224_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934946 ID=CK934946; Name=CK934946; organism=Citrus sinensis; type=EST; length=854bp
GGGGGAAAAAGTTCTCGTTCTCATTAACTTGTCAATTTTACAATCAAATA
TCAAACCAATCATGGCACAGCAGCCAGTTAATGTTCCAGCGCCAACTCCC
CCACCAAATCCGGCGATGTATTCCAATCCGGTTTCCATTATCGGCCCGCA
ATATTGCCTTCCCTATCCGGTTGATCTTGCCGTTGTTAGAAAGTTTATGA
CCCTCGCAGATGGAAGCTTTACTGTCACTGACATCAACGACGACATTATG
TTCAAAGTCAAAGAGAAACATTTTAGCCTCCATGACAAGCGGACTCTACT
CGATCCTGCCGGCAATCCTGTGGTCACCATAACAGAGAAATTGTTTTCTG
CGCACGAGAAGCATTCTGTATTCAGGGGAGCAAGCACAGATGCCAAAGAT
CTTCTCTTTACTGTGGGAGCATCTTCAGTGCTCCAATTGAAGACCACTTT
GAATGTTTTTTTGGCAGGTAATACCAAACAAGAGGTTTGTGATTTTAAGG
TCAAAGGCAGCTGGACAGAACGATCCTGTGTTGTTTATGCAGGAGAGTCC
AACACAATTGTTGCCCAGATGCACAAAAAGGAAACCGTTGGAAGCTACTT
CCTTAACAAGGATAGATTCGCCGTGACAGTTTATCCCAACATCGACTATG
CATTTATAGTTGCCCTGATTGTGATCCTTGATGACATCAACGGTGACAAC
ACTGCATGAGATTACTCATATTTCAGATTTCGGAATTGCTTCTATAAATC
ACGTAAATAAGTGTGTGGTTTATGTATTTTAAGAATGTTCTTGTTTGCCA
GTTGCTACATTAATTTCCCTTGTGTCCTAAGTTGTGCAATATAACTTGTC
AAAG
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