CK935006

Overview
NameCK935006
Unique NameCK935006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1680..1948. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CITSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis GN=ndhD PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.836e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.833e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQKF LMPKI+ITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRIRLIYLDEMGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_GOSHI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium hirsutum GN=ndhD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDR+R  YLDEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRMRLVYLDEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_GOSBA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium barbadense GN=ndhD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDR+R  YLDEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRMRLVYLDEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_NANDO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nandina domestica GN=ndhD PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.228e-38
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  YLDEMGG+AIP+PKIFTLFS  SMASLALPGMSGFVAEL+VFFGIITS+KFFLMPKI+ITFV A GMILTPIYS
Sbjct:  346 FFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFVAELVVFFGIITSEKFFLMPKILITFVTAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CARPA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya GN=ndhD PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.441e-38
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  YLDEMGG+AI +PKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLM KI+ITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRIRLVYLDEMGGMAISMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMAKILITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_PELHO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Pelargonium hortorum GN=ndhD PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.233e-37
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  + DEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQKF LMPKI+ITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRIRLGFFDEMGGMAVAIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_PANGI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng GN=ndhD PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.103e-37
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+F+  SMASLALPGMSGFVAELIVFFGIITSQK+ LMPKI+ITFVMA GMILTPIYS
Sbjct:  346 FFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFTSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAIGMILTPIYS 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_BUXMI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Buxus microphylla GN=ndhD PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.103e-37
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  YLDEMGG+AI +PKIFT+FS  SMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMA GMILTPIYS
Sbjct:  347 FFLAGTSYDRIRLIYLDEMGGIAIQMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYS 434          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CALFG (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhD PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.119e-37
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = -2
Query:    5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268
            FFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FS  SMASLALPGMSGFVAEL+VFFGIITS K+ LMPKIVI+FVMA GMILTPIYS
Sbjct:  348 FFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGIITSSKYLLMPKIVISFVMAIGMILTPIYS 435          
The following BLAST results are available for this feature:
BLAST of CK935006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
NU4C_CITSI2.836e-4298.86NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_VITVI3.833e-3990.91NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_GOSHI1.456e-3888.64NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_GOSBA1.456e-3888.64NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NANDO7.228e-3887.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CARPA9.441e-3888.64NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PELHO1.233e-3787.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PANGI2.103e-3786.36NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_BUXMI2.103e-3787.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CALFG6.119e-3785.23NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_A08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935006 ID=CK935006; Name=CK935006; organism=Citrus sinensis; type=EST; length=269bp
GCGGGGAATAAATAGGAGTTAATATCATTCCNNNTGCCATTACAAAAGTG
ATTACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAA
AAATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGG
AGGCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATA
GCTAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACT
CGTTCCTGCCAAAAAAAAA
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