CK935063

Overview
NameCK935063
Unique NameCK935063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig596 contig Csv1_Contig596:712..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935063 vs. ExPASy Swiss-Prot
Match: CCI1_ARATH (Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.633e-32
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    4 VDRASXXKVGSLFYAIYFIISFPMFLRIDEKLGDLWDLPRVAVDALGAAMLVTIILDLWRIFLGPIVPLPETKLCLQPGLPWF 252
            VDR++  +VG LFYAIYFI+SFPMF R+DEK  D WDL RVAVDALGAAMLVTIILDLWR+FLGPIVPLPE + CLQ GLPWF
Sbjct:  196 VDRSAMYRVGCLFYAIYFIVSFPMFFRMDEKSTDEWDLSRVAVDALGAAMLVTIILDLWRLFLGPIVPLPEGQNCLQSGLPWF 278
The following BLAST results are available for this feature:
BLAST of CK935063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCI1_ARATH3.633e-3278.31Cycloeucalenol cycloisomerase OS=Arabidopsis thali... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004222_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935063 ID=CK935063; Name=CK935063; organism=Citrus sinensis; type=EST; length=468bp
GGGGTGGACCGAGCTTCCNTNNNTAAAGTTGGGTCTTTGTTTTATGCCAT
CTACTTCATTATAAGCTTCCCAATGTTTCTAAGGATTGATGAAAAACTTG
GTGACCTGTGGGACTTACCCCGAGTGGCTGTTGATGCTTTGGGAGCTGCA
ATGCTTGTCACAATAATACTTGATTTGTGGCGAATCTTTCTGGGACCTAT
TGTTCCGCTTCCAGAGACGAAGCTGTGTCTACAACCAGGACTCCCATGGT
TTCCAGGACACACCAATCAAACTTGAAAGTATGGACGTGGAGAATCCAGG
AAGTTTCTACTCAACTGAGAAAACACGCAATGTATCTCTTTCCATTGACA
CTGAGCTCGTAGTTGTGGTTGAACTCTATTAGATCTCTTTTGTACTTGCT
TTTTCCTGGACATTTAACAAGAATGTGAGTAGTATCTTTAGAAAAAAAAA
AAAAAAAAAAAAAAAAAA
back to top