CK935080

Overview
NameCK935080
Unique NameCK935080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4081 contig Csv1_Contig4081:865..1548. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_VITVI (ATP synthase subunit c, chloroplastic OS=Vitis vinifera GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_TOBAC (ATP synthase subunit c, chloroplastic OS=Nicotiana tabacum GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_SOLLC (ATP synthase subunit c, chloroplastic OS=Solanum lycopersicum GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_RANMC (ATP synthase subunit c, chloroplastic OS=Ranunculus macranthus GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_PSINU (ATP synthase subunit c, chloroplastic OS=Psilotum nudum GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_POPAL (ATP synthase subunit c, chloroplastic OS=Populus alba GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK935080 vs. ExPASy Swiss-Prot
Match: ATPH_PLAOC (ATP synthase subunit c, chloroplastic OS=Platanus occidentalis GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALIIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CK935080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_VITVI1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Vitis vin... [more]
ATPH_TRACE1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Tracheliu... [more]
ATPH_TOBAC1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Nicotiana... [more]
ATPH_SOLTU1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Solanum t... [more]
ATPH_SOLLC1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Solanum l... [more]
ATPH_RANMC1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Ranunculu... [more]
ATPH_PSINU1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Psilotum ... [more]
ATPH_POPTR1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Populus t... [more]
ATPH_POPAL1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Populus a... [more]
ATPH_PLAOC1.665e-2479.01ATP synthase subunit c, chloroplastic OS=Platanus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004222_B06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935080 ID=CK935080; Name=CK935080; organism=Citrus sinensis; type=EST; length=684bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGCCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAT
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTAA
GTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCCC
CTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTCA
AAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATAGGTAAA
TTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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