CK935082

Overview
NameCK935082
Unique NameCK935082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK935082 vs. ExPASy Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42
Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = 3 
Query:  138 VFLSIFLLFILMGLSSATFISDGIFESH-AFTGRNLLQAKKACPVNFEFLNYTIITSKCKGPQFPPDKCCSAFKEFACPYADQINDLTTDCATTMFSYINLYGKYPPGLFASECQEGKRGLECPASAPTQSANASRSQITCNSSP 569
            + L  FL+ +L+ LSS++ ISDG+FES  + +GRNL  AKK C VNFE+++Y ++T +CKGP FP  +CCSAFKEFACPY  QIND+ +DCA TMFSY+N+YG YP GLFA+EC+E K GL CP   P  S N + S  T +S+P
Sbjct:    4 ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCKGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVCPL-PPLYSHNLNAS--TADSTP 145
The following BLAST results are available for this feature:
BLAST of CK935082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LRE_ARATH2.388e-4256.55GPI-anchored protein LORELEI OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004222_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935082 ID=CK935082; Name=CK935082; organism=Citrus sinensis; type=EST; length=814bp
GGGGGTCGCTGTCTGTTGCATACTGGTTTTGTACAAGCGTGTAAAAAGCT
TCTATCTTTTTTGAAGAGAATAGGTGGGAGCACAAAAAAAATTGGATCTT
TTCTGGTGCTGTGAGAGAAATGGTGGAGTTCAACAGAGTGTTTCTATCTA
TTTTTCTTTTGTTTATTTTGATGGGTTTGTCTTCTGCAACTTTCATTTCA
GATGGTATCTTTGAATCGCACGCTTTTACTGGCAGAAATCTTCTCCAGGC
TAAGAAAGCATGCCCCGTGAATTTCGAGTTTCTGAACTACACAATCATCA
CAAGCAAATGCAAAGGACCCCAGTTTCCACCTGACAAATGCTGTAGTGCT
TTTAAGGAATTTGCTTGTCCTTATGCGGATCAGATTAATGACTTGACGAC
AGACTGCGCTACAACCATGTTCAGCTACATTAACCTGTATGGGAAATACC
CTCCTGGTCTTTTTGCCAGTGAGTGTCAGGAAGGGAAGCGAGGTCTTGAA
TGTCCTGCATCAGCACCAACTCAGTCGGCAAATGCAAGTAGGAGTCAGAT
CACGTGTAATTCATCCCCACTGCTAATGTTCACAGCCGCCTTTCTTATTT
TGGTATTCCAGTTATTATGAGTTCTCAAATTTCAGTTTCTATACATCCGA
TTACTTGATCACACCCCTCTGTATTTTCAGAACTGTGATAAAGGCAAATC
ACCATCGTACAGAAATTTTATTTATGCGTTTGTTTCTGCTTAATTCTTCC
ATTTCACTGAGAAGACGAAGTTAGTATGTACTGTCAACTGCATTTGTTGA
CAAAAGAGCTGTTT
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