CK935095

Overview
NameCK935095
Unique NameCK935095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1762 contig Csv1_Contig1762:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935095 vs. ExPASy Swiss-Prot
Match: BRAP_MOUSE (BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.664e-43
Identity = 83/218 (38.07%), Postives = 125/218 (57.34%), Query Frame = 2
Query:  167 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD--ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 814
            NP      G++HL++    +  +    RS  + V+ VP  ++S + ++F     D +E++  IR D+  ++Y VLIK   Q  AD FY   NG++F+  E +VC ++++   E  +  + AS P    TELP C +CLER+D   +GIL+T+C+HSF   C  +W   +C VCR+C   +  E   C  CG  ENLW+CLICG +GCGRY   HA +H
Sbjct:  131 NPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCVLTVPATMTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKH 347          
BLAST of CK935095 vs. ExPASy Swiss-Prot
Match: BRAP_HUMAN (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.664e-43
Identity = 82/218 (37.61%), Postives = 125/218 (57.34%), Query Frame = 2
Query:  167 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD--ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 814
            NP      G++HL++    +  +    RS  + ++ VP  ++S + ++F     D +E++  IR D+  ++Y VLIK   Q  AD FY   NG++F+  E +VC ++++   E  +  + AS P    TELP C +CLER+D   +GIL+T+C+HSF   C  +W   +C VCR+C   +  E   C  CG  ENLW+CLICG +GCGRY   HA +H
Sbjct:  132 NPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKH 348          
BLAST of CK935095 vs. ExPASy Swiss-Prot
Match: EPT1_SCHPO (RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe GN=SPAC16E8.13 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.561e-33
Identity = 81/231 (35.06%), Postives = 125/231 (54.11%), Query Frame = 2
Query:  191 GLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMED--RYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFM--LSVEY---------TELAEI-------ASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ---QDERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 814
            G+VHL+R    S     ++    + ++A+P Y+S  + + F G    H + +  IR    +D  R   L+K  DQ +   FY+  NGK FS  + E CH+L +  ++++Y         TE   +       AST PA   ELPTC +CLER+D   +G+++ +C H+F C C  KW   SC VCR+  +    + +  C+VC   ++LW+CLICG +GCGRY + HA +H
Sbjct:   67 GVVHLYR-VFPSESHEFDAPGLILAILAIPLYMSPSDVLGFLGEK--HCKSIQHIRLLKTKDPNRIMALLKFKDQASVIRFYTEFNGKAFSQIDPETCHVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPA-LIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCPVCRYTQKVQSSEFQSKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQH 293          
BLAST of CK935095 vs. ExPASy Swiss-Prot
Match: YQOE_CAEEL (Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis elegans GN=EEED8.16 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.119e-31
Identity = 69/218 (31.65%), Postives = 112/218 (51.38%), Query Frame = 2
Query:  167 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD--ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 814
            NP   +  G++H ++   +   +    R  C++  AVP  +   E + F    +  +  +  +R+ A  ++Y ++IK  +   A  FY   N   F+  E+  C + F+  +E T   ++ S+     TELPTC +CLER+D     +L+ +C+HSF   C  +W   +C VCR+    +      C+ CG   +LW+CLICG +GCGRY E HA RH
Sbjct:  130 NPLTEKTEGIMHFYKYNDEKLTKVAQCRMLCMY--AVPAQVEVREIISFMCISLPMIVSIKVVRDPA-PNQYMLIIKFKEHNDAVTFYEEFNNCPFNDLESYCCTLFFVDRIECTTSNDLFSSDDTSLTELPTCAVCLERMD---DSVLAILCNHSFHARCLEQWADNTCPVCRYVQSPEVVAEQRCNDCGMSNDLWICLICGNIGCGRYAEQHAQRH 341          
BLAST of CK935095 vs. ExPASy Swiss-Prot
Match: ETP1_YEAST (RING finger protein ETP1 OS=Saccharomyces cerevisiae GN=ETP1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.252e-31
Identity = 80/249 (32.13%), Postives = 119/249 (47.79%), Query Frame = 2
Query:  191 GLVHLFRGTSQSYQQNPNS------RSTCIFVVAVPNYLSSDEFVRF-CGSHI--DHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPAG----------FT----------ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCR----------FCHQQDERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 814
            G++ LF+ ++ +   N           T I ++ VP Y +  + + F  G  I    V     +RN    M   ++VLIK  + L A  F    NGK FS  + E CH++ +  + + +  ++   P A           FT          ELPTCP+CLER+D +T+G+++  C H+F C C  KW    C VCR             Q  +   C+ CG+ +NLW+CLICG VGCGRY   HA++H
Sbjct:   86 GIIRLFKLSNANNTLNEKEILTIPGDDTMICILFVPTYFTVHDLLHFYIGDDIVNKQVSNFRILRNQQKGMGFNFTVLIKFRNALDAKNFKEEFNGKSFSRMDPETCHVISVKEIVFQK--KLFQRPAANEDFPYLLTDPFTVKKKKELVKVELPTCPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLICGNVGCGRYNSKHAIKH 332          
The following BLAST results are available for this feature:
BLAST of CK935095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BRAP_MOUSE1.664e-4338.07BRCA1-associated protein OS=Mus musculus GN=Brap P... [more]
BRAP_HUMAN1.664e-4337.61BRCA1-associated protein OS=Homo sapiens GN=BRAP P... [more]
EPT1_SCHPO1.561e-3335.06RING finger protein ETP1 homolog OS=Schizosaccharo... [more]
YQOE_CAEEL1.119e-3131.65Uncharacterized RING finger protein EEED8.16 OS=Ca... [more]
ETP1_YEAST4.252e-3132.13RING finger protein ETP1 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935095 ID=CK935095; Name=CK935095; organism=Citrus sinensis; type=EST; length=814bp
GGGGAATTTCCCTCAACCGTGTCGACTCACCGATTCCAGGCGCCAGAGTG
AAAAGACAATGTTCGTTCTCCGAGTACACTCAGTGGACGACAACCACCCT
ATCACGATTGAAGAAGCCGGCTTCTGCACCGTCTCCAGTACTGCCACCCG
ATCAAGGGCTAACCCTAACCCTAAATTCAGCGAGCGAAGAGGATTGGTGC
ACTTGTTTCGAGGAACGTCGCAGAGTTATCAACAGAACCCTAACTCGCGA
TCCACGTGTATCTTTGTGGTTGCTGTCCCCAACTACCTCTCCTCCGATGA
ATTCGTCCGTTTCTGTGGGTCTCACATCGACCACGTGGAGGAGCTCATTT
TCATCAGGAATGATGCTATGGAAGATCGATACAGTGTTTTGATCAAGCTT
GTTGATCAGTTGACTGCTGATGAATTTTATAGCAACCTCAATGGTAAAAG
GTTTTCTCCTGCTGAGGCTGAGGTATGCCACATGCTATTTATGCTTTCTG
TGGAGTACACAGAATTAGCTGAGATTGCTAGCACACCGCCAGCAGGATTT
ACCGAGCTTCCTACTTGTCCGATTTGTCTTGAAAGGTTGGACCCAGACAC
TAGTGGAATTCTCAGTACAATCTGTGACCATTCATTTCAATGTTCGTGCA
CTGCAAAATGGACTGTTTTATCTTGTCAGGTTTGTCGATTTTGTCACCAG
CAGGATGAGAGACCAACTTGTTCTGTTTGTGGAACGGTGGAGAATCTTTG
GGTCTGTTTGATATGTGGTTTTGTGGGATGTGGAAGATATAAGGAAGGGC
ATGCTGTTAGGCAC
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