CK935114

Overview
NameCK935114
Unique NameCK935114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1763 contig Csv1_Contig1763:1..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935114 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.540e-57
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 2
Query:    5 IKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPDDPAKREFAEELFSYTDTFNKTVRSSLQGDG---NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKR 535
            IK+V IDL +RP WY EKV+  NKVPSLEHNN+VKGESLDL+K+ID++FEGP+L PDD  K++FAEEL +YTD FNK   SS+   G   +EA AA D +E ALSKFNDGPF LG FS+ DIAY PFIER+Q F   +K  DIT GRP L  +IEE+NK  A+ +T++DP+ L+E  KKR
Sbjct:   61 IKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of CK935114 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.540e-57
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 2
Query:    5 IKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPDDPAKREFAEELFSYTDTFNKTVRSSLQGDG---NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKR 535
            IK+V IDL +RP WY EKV+  NKVPSLEHNN+VKGESLDL+K+ID++FEGP+L PDD  K++FAEEL +YTD FNK   SS+   G   +EA AA D +E ALSKFNDGPF LG FS+ DIAY PFIER+Q F   +K  DIT GRP L  +IEE+NK  A+ +T++DP+ L+E  KKR
Sbjct:   61 IKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of CK935114 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.853e-48
Identity = 95/178 (53.37%), Postives = 124/178 (69.66%), Query Frame = 2
Query:    5 IKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPDDPAKREFAEELFSYTDTFNKTVRSSLQGDGN---EASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYK 529
            I+LV IDLQ++P WY EKV+    VPSLEHN ++ GESLDL+K+IDSHFEGP+L P+DP KR+FA+EL +Y + F K + S L    +   E  AA D +E ALSKF DGPF LG FS+ DIAY   IER Q +   ++K +IT GRP L  +IEE+N+ EA+ QT+ DP  L++  K
Sbjct:   60 IELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAK 237          
BLAST of CK935114 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.053e-45
Identity = 90/178 (50.56%), Postives = 125/178 (70.22%), Query Frame = 2
Query:    5 IKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPDDPAKREFAEELFSYTDTFNKTVRSSLQGD---GNEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYK 529
            ++LV IDLQ++P WY +KV+    VPSLEH++EV+GESLDL+++IDS+F+GP+L P+D AKR+FA+ELF+  + F K + S L       +E  AA D LE  LSKF+DGPF LG FS+AD+AY   +ER Q +   ++  DI  GRP L  +I+EMNK EA+ QT+ DP  L++  K
Sbjct:   60 MELVAIDLQDKPAWYKDKVYAQGTVPSLEHDSEVRGESLDLIRYIDSNFDGPALLPEDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAK 237          
The following BLAST results are available for this feature:
BLAST of CK935114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ4.540e-5761.11Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI4.540e-5761.11Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ3.853e-4853.37Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE3.053e-4550.56Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935114 ID=CK935114; Name=CK935114; organism=Citrus sinensis; type=EST; length=818bp
GGGGATTAAATTGGTTCCTATTGATTTGCAAAACAGGCCTGATTGGTACA
TGGAGAAAGTCCATCTGGCGAACAAGGTGCCATCATTGGAACACAATAAT
GAAGTTAAAGGAGAGAGTCTCGATTTGATGAAATTCATTGACAGTCACTT
CGAAGGGCCTTCTCTTTTCCCTGATGATCCTGCCAAGAGAGAATTTGCAG
AAGAGTTGTTTTCGTACACCGACACATTCAATAAAACCGTACGTTCTTCG
CTTCAAGGGGATGGAAATGAAGCCAGTGCTGCATTTGATTATCTTGAAAC
GGCTCTCTCCAAGTTCAATGATGGGCCTTTTCTTCTCGGCCATTTCAGCA
TAGCAGATATAGCTTATGCTCCATTCATTGAAAGATATCAGCCTTTCTTA
CTGGAAGTGAAGAAGAATGACATCACTGCAGGGAGGCCTAAACTGGCTGC
TTGGATTGAGGAGATGAACAAGAATGAGGCTTTCAATCAAACCCGCCGTG
ATCCTAAGGAGCTTGTTGAAACCTACAAGAAAAGATTTGCGGCTAAGATC
TGAATTGCGGCTATTCACTCTCATCTGTCTCAAAATTGCATAATCAGTCA
TGCCGTCGTGTTCTTACAGTGGCTCCAAGATTCTCTTCAATTCAAGCGTG
GATTATTACTAGTGTTATTATAGGTGATCTTGCAATGTATTTTCAGAAAA
GCTAGTTGTAGAATTATGCAAAAGAACCGTGTAATTTAGTATATCAATCA
ACACTACAGTGCNGAAAACAAAAAAAAAAAAAAAAAAAAAGAAAANNNAA
AGAAAAAAAAAAAAAAAA
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