CK935175

Overview
NameCK935175
Unique NameCK935175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935175_ssr865 microsatellite CK935175_ssr865:865..876. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1770 contig Csv1_Contig1770:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935175 vs. ExPASy Swiss-Prot
Match: WUN1_SOLTU (Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.071e-28
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:  340 FVFVPLSITSFGPIVLAEGCDHSRQISWVHAWTVADGIITQVREYFNTSLTVTRFGKDLSGQSQRKKSPPSDFPSTAEINPVHCPSVWESSVSNRDGKSVPGLVLAL 660
            F F+  +I  FG +VL EGCD +R I+WVHAWTV DG+ITQVREYFNTSLTVTRFGK             SD  S   I  +HCPSVWESS+ NR GKSVPGLVLAL
Sbjct:   15 FQFLHKTIDVFGSVVLVEGCDPTRSITWVHAWTVTDGVITQVREYFNTSLTVTRFGK-------------SDISS---ITTLHCPSVWESSLPNRVGKSVPGLVLAL 105
The following BLAST results are available for this feature:
BLAST of CK935175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WUN1_SOLTU1.071e-2862.62Wound-induced protein 1 OS=Solanum tuberosum GN=WU... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_A10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935175 ID=CK935175; Name=CK935175; organism=Citrus sinensis; type=EST; length=922bp
GGGGAAAGCCATCACCAGTTCTCTCTGGTAACCCTTATCCAGAATCACAA
AACAAATTCATTTCATCTTCAGTTTCTCTGTTTTTGTTGTTGCCATTTTT
TAAGGCTATTCCGTCAAGAACTGGCTAACTCTCAGCAGAAAAATCCGGAA
GATTCCGAAAACAAGAACCAGCGCGTGGTTCTTGCTCTGTATGATGCCTT
AAAATCTCGAGACGTTGAAACGGTACACAAGATCCTTGCCCCGGACCTAG
AGTGGTGGTTCCATGGCCCGCCGACCCACCAGTTTATGATGCACCTTCTC
ACCGGCAGCACCACCGCATCGTCAGCATCGCAAAGCTCCTTCGTATTCGT
TCCTCTCTCGATCACATCGTTCGGGCCCATTGTCCTCGCCGAGGGCTGTG
ATCACAGCCGTCAAATCAGCTGGGTCCACGCCTGGACGGTCGCTGATGGG
ATAATTACTCAAGTCAGAGAATACTTCAACACTTCGCTTACCGTCACCCG
CTTCGGTAAAGACTTGTCTGGCCAAAGTCAGAGGAAGAAATCACCACCCT
CTGATTTCCCATCAACAGCGGAGATTAATCCGGTGCATTGCCCCTCCGTT
TGGGAGAGCAGCGTCTCCAACCGGGACGGTAAATCTGTCCCGGGTTTGGT
TCTCGCTCTCTAAGCAAACCAAAAAGGGACCGAGATTGATCCTGTGCAGC
CGCGTGTATTATAATATTATACCATATTAACATATAAATAAAGGCTGCAC
GTGACGCGTGTCGCCCCCGTGTGGGCCGTCGCTTAGAGATGTGAGTGACT
GAGGCCCTGGTTGGGGGAGTGCTTTGGGTTGTTTTCGCCTTTATTTTTGT
GTCTGGCTTTCCGGGTTTGTTTGTTTGATATGTTGGTCTTTCCGNNNCGG
ATCATGATGTGTGAACCCGAAC
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