CK935269

Overview
NameCK935269
Unique NameCK935269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935269_ssr128 microsatellite CK935269_ssr128:128..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10456 contig Csv1_Contig10456:6..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935269 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 67/189 (35.45%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  247 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCKAYKG---NVVPKACSNL 792
            V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+ +  +    F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YVPWV V G+PL ED    ++ VC+ Y+G   +V P + S+L
Sbjct:   73 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKKPDVCPSSTSSL 255          
BLAST of CK935269 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 61/191 (31.94%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  238 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQ-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVEGQPL--YEDYENFI-SYVCKAYKGNVVPKAC 783
            N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+   + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++VPWV++ G  L  ++ ++N + + +C+ Y G+     C
Sbjct:   73 NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKV-LEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTLLCEWYSGDKAIPYC 260          
BLAST of CK935269 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 56/205 (27.32%), Postives = 100/205 (48.78%), Query Frame = 1
Query:  190 FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCKAYKGNVVPKACSN 789
            F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++      KYS  E      E  P   + + +C +   G +L      +T SL P   ++PW+V+ G    +   +    VC+A +   +P AC +
Sbjct:  120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYSLDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQ--PMPSACKD 317          
The following BLAST results are available for this feature:
BLAST of CK935269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GILT_HUMAN2.478e-2135.45Gamma-interferon-inducible lysosomal thiol reducta... [more]
YVRI_CAEEL5.713e-1831.94GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
YKJ2_CAEEL1.407e-1627.32GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004563_G07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935269 ID=CK935269; Name=CK935269; organism=Citrus sinensis; type=EST; length=847bp
GGGGGACAATTAATGTCTCCGTGTTGCTTTCATGCGCTAAAATGTCGTAA
CAAAACCCATTCTCTCACTTTTTCACTTAAGAAGAAAGGGGAAAAAAAAT
AGCCCTAATTTACGGATTCATCTATGGCTTCTTCTTCTTCTTCCTCAAAA
AAAGCCTTATCTCTTGTCTTTTACATTACCTTGTTCTGCTTCTTGTCTGG
CTCTGTTTCAGCCTCTAGAACTTCACCTTCAGATGTTAACAGTAAAGTCA
AGTTAGGTCTGTACTACGAGTCTTTGTGTCCATACAGTGCCAATTTCATT
ATCAATTACTTGGTTAAAATCTTTGAAGATGTTGATCTGTTATCCATCGT
TGATCTCCATCTTTCTCCCTGGGGGAACGCCAAAATCAGAGCCAACAACA
GCACCTTTGATTGCCAGCATGGCCCTTCTGAATGCTTGCTGAACACTGTG
GAAGCTTGTGCGATTGATAGTTGGCCTGAATTGAACAAGCATTTCCCGTT
TATCTACTGCATTGAGAGTTTAGTGTACGAGCATAAGTATTCTCAGTGGG
AAACATGCTTTGATAAATTGGAACTGGATCCGAAACCAATTGTTGATTGC
TATACCAGTGGATATGGAACACAGCTTGAGTTAAAATATGCAGCTGAGAC
AAATTCCCTTGTGCCTCCTCATCAATATGTGCCTTGGGTTGTTGTGGAAG
GACAGCCACTGTATGAGGACTACGAAAATTTTATAAGCTATGTCTGCAAG
GCTTATAAAGGCAATGTCGTGCCTAAGGCTTGCAGCAACCTATTCCTCAT
CACGAACTACTATGGAGTCGAACAAAAGCCTGTCTTTCCAGTTGGCT
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