CK935320

Overview
NameCK935320
Unique NameCK935320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 4.704e-96
Identity = 172/224 (76.79%), Postives = 195/224 (87.05%), Query Frame = 2
Query:    5 GLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQDHE 658
            GLNQ+ SNDDGKFLLAA++ RRPTCTDYIISLNCDDVS+GS+TYIG+LRSNFLGTKFT+YD  P N   +VT+ RS+R +++KQVSP++ +GNY VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS LDSFPS  FFRSKSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+ ENG AG +HE
Sbjct:  141 GLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAGPEHE 364          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.379e-86
Identity = 155/222 (69.82%), Postives = 182/222 (81.98%), Query Frame = 2
Query:    5 GLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQND---QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQDHEK 661
            GL ++  DDGKFLLAARKCR+PTCTDY+ISL+  D+SKGS+TYIG+LRSNFLGTKFT+YD HPP   A V+K RS R V + QVSP++ AGNY V+HISYELNVLG+RGPRRM C+MD+IP S+++ GG APTQTEF  SGLDSFPSI FFRSKS R ++  +    QKE  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENG   Q+ +K
Sbjct:  141 GLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSARIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQEQDK 362          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.423e-78
Identity = 142/221 (64.25%), Postives = 171/221 (77.38%), Query Frame = 2
Query:    5 GLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQND---QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQDHE 658
            GL  +  DDGKFLLAARKCRR TCT+Y+ISL+ +D+SK + +Y+G+LRSNFLGTKFTIYD HPP A   ++K +S R +    +SP++ AGNY V+HISYELNVLGSRGPRRM C MD+IP S+IE GG APTQTEF  S  +SF SIPFF+SKS+RA N       Q    LVL+NK+PRWHE LQCWCLNF+GRVTVASVKNFQLVAS E+    Q+H+
Sbjct:  144 GLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPAGNYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSKSVRANNSTASLLTQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASDESNPTNQEHD 364          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.266e-60
Identity = 123/235 (52.34%), Postives = 158/235 (67.23%), Query Frame = 2
Query:   26 DDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE--FHHSGLDSFPSIPFFRSKSI--RAENF-----------------------QNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG 646
            D GKFLL+A++ R+ TCT+Y+IS++ D++S+ SSTYIG+LRSNFLGTKF IYD  P    A +    RS+R+ N K+VSPK+ +G+Y++A ++YELNVLG+RGPRRM CVM +IPASS+EPGG+ P Q E     +  +SF S   F   SI  R+ +F                       +   KE  LVLRNKAPRWHEQLQCWCLNF GRVT+ASVKNFQL+A+     AG
Sbjct:  156 DSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAG 390          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.210e-59
Identity = 123/208 (59.13%), Postives = 149/208 (71.63%), Query Frame = 2
Query:    5 GLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGH-PPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 625
            GL  S  DDGKFLLAA K +  TCTDYIISL  DD+S+ S  Y+G++RSNFLGTKFT++DG+  P+  A   K R +R  N  +VS K+  G+Y VAHI+YELNVLGSRGPR+MQC+MD IP S++EP GVA   +EF   G  S  S    RS+S    +  +  KE  LVL NK PRWHEQL+CWCLNF+GRVTVASVKNFQLVA+
Sbjct:  129 GLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGA--AKLRKSRSYNPAKVSAKVPLGSYPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRSTLS----RSQSKPLRSSSSHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAA 330          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.006e-59
Identity = 125/228 (54.82%), Postives = 158/228 (69.30%), Query Frame = 2
Query:    5 GLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFP--SIPFFR--SKSIRAENFQ-----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQDHEK 661
            GL  S  D+GKFLLAA K +R TCTDYIISL  DD+SK S+ Y+GR+RSNFLGTKFT++DG    ++    K + +R  N  +VSP++  G+Y +AHISYELNVLGSRGPRRM+C+MD IP S +E  GV  +      + + SF   S P FR  SK +R+ +       N+  +  LVL NKAPRWHEQL+CWCLNF+GRVTVASVKNFQLVA + +  AGQ  E+
Sbjct:  123 GLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFDG----SQTGAAKMQKSRSSNFIKVSPRVPQGSYPIAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVAS------TSISSFSSRSSPVFRSHSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVA-VSDCEAGQTSER 339          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.362e-55
Identity = 118/240 (49.17%), Postives = 154/240 (64.17%), Query Frame = 2
Query:   23 NDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ-----------------TEF------HHSGLDSFPSIPFFRSKSIRAENFQND----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQDHE 658
            ++ GKFLL+A++ RR T TDYIIS++  ++S+ SS YIG+LRSNFLGTKF IYD  PP NA    ++ R++R+ + ++VSPK+  G Y +  ++YELNVLG+RGPRRMQC M +IPAS++EPGG+ P Q                 T F       HS   S      F   +++ +  + D     KE  LVLRNKAPRWHEQLQCWCLNF GRVTVASVKNFQL+A+     +G   E
Sbjct:  152 DETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRRFSSRKVSPKVPTGCYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMATSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASE 391          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.362e-55
Identity = 112/225 (49.78%), Postives = 152/225 (67.56%), Query Frame = 2
Query:   23 NDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCR-STRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE------FHHSGLDSFPSIPF-FRSKSI----------------RAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 625
            +++GKFLLAA++ RR T T+YIIS++  ++S+ S+ Y+G++RSNFLGTKF +YD  PP     +  C+  +R+++ ++VSPKL  G+Y +AH+ YELNVLG+RGPRRMQC M +IPAS+++P GV P Q E      F  S   +  S  F F  +S+                + E+   + KE  LVLRNK PRWHEQLQCWCLNF GRVTVASVKNFQL+A+
Sbjct:  155 SENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTGSYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTNTSSRFSFMDRSLDFSSSRFSEISGSANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLIAA 379          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.084e-55
Identity = 110/226 (48.67%), Postives = 151/226 (66.81%), Query Frame = 2
Query:   26 DDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP---NAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE-----------------------FHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 625
            ++GKFLL+A++ RR T T+YIIS++ D++S+ S++Y+G+LRSNFLGTKF +YD  PP   ++ A +T   S  + + ++VSPK+ +G+Y++A I+YELNVLG+RGPRRM C+M++IP SS+EPGG  P Q E                       F H  LD   S   F    I  ++ + +     L+L+NK PRWHEQLQCWCLNF GRVTVASVKNFQLVA+
Sbjct:  156 ENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKVPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRSLDF--SSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAA 379          
BLAST of CK935320 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.410e-54
Identity = 115/228 (50.44%), Postives = 151/228 (66.23%), Query Frame = 2
Query:   26 DDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE--FHHSGLDSFPSIPFFRS----KSIRAENFQ-------------------NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLE 631
            + GKFLL+A++  R TCT+Y I ++ D+ S+ S+ YIG+LRSN LGTKF IYD  PP   A V++  +++R+   ++VSPK  +  Y +A +SYELNVLG+RGPRRM CVM +IPASS+E GG  P Q +     S  +SF SI F +S    +SIR  + +                   ++ KE  L+LRNKAPRWHEQLQCWCLNF GRVTVASVKNFQLVA+ +
Sbjct:  156 ESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQ 383          
The following BLAST results are available for this feature:
BLAST of CK935320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP3_ARATH4.704e-9676.79Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP6_ORYSJ3.379e-8669.82Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP11_ORYSJ4.423e-7864.25Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP8_ORYSJ9.266e-6052.34Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP11_ARATH1.210e-5959.13Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP9_ARATH6.006e-5954.82Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP7_ORYSJ2.362e-5549.17Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ2.362e-5549.78Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP10_ARATH3.084e-5548.67Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP14_ORYSJ3.410e-5450.44Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_B03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935320 ID=CK935320; Name=CK935320; organism=Citrus sinensis; type=EST; length=680bp
AGGGGGTTTAAATCAATCTTCAAATGATGATGGAAAGTTCCTTCTTGCTG
CCAGGAAGTGTCGACGACCTACTTGCACTGACTACATTATCTCATTAAAT
TGTGACGATGTGTCTAAAGGGAGCAGCACCTATATTGGAAGGTTGAGGTC
CAACTTTTTGGGCACCAAGTTCACAATCTATGATGGGCATCCTCCAAATG
CTGAAGCAAGAGTTACTAAATGTCGCTCCACAAGACAGGTTAATATGAAA
CAAGTCTCCCCTAAATTACTTGCTGGCAACTATCATGTAGCCCATATATC
ATACGAGTTAAATGTCTTGGGTTCTAGAGGTCCGAGGAGGATGCAATGTG
TTATGGATGCAATTCCTGCTTCTTCCATTGAGCCAGGGGGAGTGGCCCCT
ACACAGACTGAATTTCATCATAGCGGTCTCGATAGCTTTCCTTCCATTCC
CTTTTTTAGATCAAAATCAATCCGCGCGGAAAATTTCCAGAATGACCAGA
AAGAGGGGCTGTTGGTGTTGAGGAACAAGGCTCCGAGATGGCATGAACAA
CTCCAGTGCTGGTGCTTGAACTTCAATGGACGGGTAACTGTTGCTTCTGT
TAAGAATTTTCAACTGGTTGCTTCCTTGGAGAACGGGGTAGCTGGTCAGG
ACCATGAGAAATGTTATTCTGCAGTNNNGA
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