CK935430
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34 Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 386 MKLVRFLMKL++ETV IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY+ILPDSL LETLL+++TP+ K KK +GR Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33 Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380 MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+ P+VK KK A Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33 Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380 MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+ P+VK KK A Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33 Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380 MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+ P+VK KK A Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33 Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380 MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+ P+VK KK A Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32 Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 371 MKLVRFLMKL NETV IELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL++++ + K KK Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29 Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 383 MKLVRFLMKL++ETV IELKNGT V GTI GVD++MNTHL+ V +T+K K PVKLD LS+RGNNIRY ILPD L L+TLL+++ PR K + AG Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_YEAST (Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae GN=SMD1 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14 Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VKLDHLSVRGNNIRYYILPDSLNLETLLVEE 347 MKLV FL KL NE V IELKNGT V GT+ V MN L VKLTL G+ P L ++++RGN IR ILPDSLNL++LLV++ Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110 The following BLAST results are available for this feature:
BLAST of CK935430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935430 ID=CK935430; Name=CK935430; organism=Citrus sinensis; type=EST; length=648bpback to top |