CK935430

Overview
NameCK935430
Unique NameCK935430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1818 contig Csv1_Contig1818:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 386
            MKLVRFLMKL++ETV IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY+ILPDSL LETLL+++TP+ K KK  +GR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380
            MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380
            MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380
            MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 380
            MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV+L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 371
            MKLVRFLMKL NETV IELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVKLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 383
            MKLVRFLMKL++ETV IELKNGT V GTI GVD++MNTHL+ V +T+K K PVKLD LS+RGNNIRY ILPD L L+TLL+++ PR K +   AG
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95          
BLAST of CK935430 vs. ExPASy Swiss-Prot
Match: SMD1_YEAST (Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae GN=SMD1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 3
Query:   99 MKLVRFLMKLNNETVPIELKNGTIVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VKLDHLSVRGNNIRYYILPDSLNLETLLVEE 347
            MKLV FL KL NE V IELKNGT V GT+  V   MN  L  VKLTL                      G+ P        L ++++RGN IR  ILPDSLNL++LLV++
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110          
The following BLAST results are available for this feature:
BLAST of CK935430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD1_DROME7.993e-3469.79Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_MOUSE3.967e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu... [more]
SMD1_MACFA3.967e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa... [more]
SMD1_HUMAN3.967e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi... [more]
SMD1_BOVIN3.967e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru... [more]
SMD1_SCHPO4.386e-3272.53Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_CAEEL1.194e-2967.37Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_YEAST9.188e-1444.55Small nuclear ribonucleoprotein Sm D1 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004555_G03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935430 ID=CK935430; Name=CK935430; organism=Citrus sinensis; type=EST; length=648bp
GGGGAGAGTGCAGCACAACGTTCCCGCTTCCTAGTAGTAGAGAATCTTCT
TCTCTCCGCTTTTGCTTCAAAGCCCTAGCTTTCGTCTTGCTCACCAAAAT
GAAGCTCGTCAGGTTCTTGATGAAGTTGAACAATGAGACCGTGCCGATTG
AACTGAAGAACGGAACCATTGTTCACGGAACCATCACAGGTGTGGATATC
AGTATGAACACACATTTGAAAACAGTGAAACTTACGCTGAAGGGGAAAAA
TCCAGTGAAATTGGATCACCTAAGTGTGAGGGGTAACAATATCCGTTATT
ATATCCTTCCTGACAGCTTGAATCTTGAAACATTGCTGGTTGAAGAGACA
CCTAGGGTCAAGCCAAAGAAGCCGACTGCTGGGAGGCCGGTGGGACGTGG
TCGGGGCCGTGGACGCGGTCGCGGGCGTGGCCGTGGTCGTTAGATATGTT
GCACTGGTTATAGTTTTTGGGGCACCTGGTCATGTAAACATCTTTGTTGT
AGGAGTGTGTGGGGACATGGAAAGGAGTGATGTTATCTTTTAATATTGTT
CCACCAGGGTGACTTGATCTAGAATTCGAAGCTTCACTCCTTTGTTTTTG
CTTTCTTATAATGGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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