CK935432

Overview
NameCK935432
Unique NameCK935432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.973e-37
Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 3
Query:   12 VPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKS-QGSEQLTKEKLIAAFSCESSSIQP 437
            VPNISKMDKASLLGDAI+YI ELQ K+K+ME ER    G  + LS      N  +   +P+VDIQA ++EVVVRV  PLDSHPASR+IQA +++ ++++E+KLS   D +FHTFVIKS  GS+ LTKEKLIAAF  E+SS QP
Sbjct:  418 VPNISKMDKASLLGDAISYIKELQEKVKIMEDERV---GTDKSLS----ESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTKEKLIAAFYPETSSTQP 553          
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.624e-34
Identity = 78/148 (52.70%), Postives = 106/148 (71.62%), Query Frame = 3
Query:   12 VPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE-SSSIQPLSSVG 452
            VPNISKMDKASLLGDA++YINEL AKLKVMEAERE L         + SNP +   +   D+++Q + ++V VR++CPL+SHPASR+  AF+++++ V+ S L    D V HTFV+K   SE+LTKEKLI+A S E ++S+Q  +S G
Sbjct:  456 VPNISKMDKASLLGDAVSYINELHAKLKVMEAERERL--------GYSSNPPISLDS---DINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVK---SEELTKEKLISALSREQTNSVQSRTSSG 589          
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = 3
Query:    6 AGVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQG---SEQLTKEKLIAAFS 413
            A VPNISKMDKASLL DAI YI ++Q K++V E E++ +          ESN     Q    +VD Q  HD+ VVR+SCPL++HP S+VIQ  ++ ++   +S ++   + V HTF ++ QG   +EQL K+KL+A+ S
Sbjct:  341 AVVPNISKMDKASLLADAITYITDMQKKIRVYETEKQIMKRR-------ESN-----QITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGGCTAEQL-KDKLLASLS 466          
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = 3
Query:    6 AGVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENL---------SGN------SRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAA 407
            A VPN+SKMDKASLLGDAI+YINEL++KL+  E+++E +          GN      SR      SN +  + +   ++D++    +V++RV C    HP +R ++A K+  + V  + LS  ND++     +K  GS+    ++L  A
Sbjct:  436 AVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVK-MGSQFFNHDQLKVA 583          
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 3
Query:    6 AGVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENL----------SGNSRDLSAFESNPNVESQNRAP-DVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFS 413
            A VPN+SKMDKASLLGDAI+YI+EL++KL+  E+++E L          +GN++         N ES      +VD++    + ++R+ C   +HP ++ ++A K+  + V  + LS  ND++     +K  G++  T+++L  A +
Sbjct:  437 AVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVK-MGNQFFTQDQLKVALT 582          
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    6 AGVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGN---------SRDLSAFESNPNVESQNRAP---DVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAA 407
            A VPN+SKMDKASLLGDAIAYINEL++K+   E+E+  +             R  SA   + +    +  P   +++++    + ++RV     +HPA+R++ A  D ++ V  + +S  ND++     +K  G    T+E+L A+
Sbjct:  473 AVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVK-MGFRIYTQEQLRAS 617          
BLAST of CK935432 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 3
Query:    6 AGVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNV--------ESQNRAPDVDIQAAH-DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIK 362
            A VPN+SKMDK SLL DA+ YINEL++K + +E E+  +     +L       N         E  +    ++++    D+ +VRV    D HP +R++ A  D ++ V  + +S  ND++     +K
Sbjct:  364 AVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRNAIPSVCKYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVK 491          
The following BLAST results are available for this feature:
BLAST of CK935432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AIB_ARATH5.973e-3760.14Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH013_ARATH3.624e-3452.70Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH003_ARATH4.156e-2243.88Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
ATR2_ARATH4.450e-1634.90Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH3.767e-1533.33Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH4.605e-1332.88Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH2.527e-1131.25Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004555_G06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935432 ID=CK935432; Name=CK935432; organism=Citrus sinensis; type=EST; length=756bp
GGGGAGCTGGGGTACCTAACATATCCAAGATGGATAAAGCATCGTTGCTG
GGAGATGCCATTGCTTACATCAATGAGCTTCAAGCAAAGCTAAAGGTCAT
GGAAGCAGAGAGGGAGAACCTAAGTGGCAACTCCAGAGACTTGTCTGCCT
TTGAGTCGAATCCTAATGTGGAAAGTCAGAACCGAGCCCCTGATGTTGAT
ATTCAAGCTGCCCATGATGAGGTGGTTGTAAGAGTGAGCTGTCCTCTTGA
TTCACATCCTGCATCAAGAGTCATCCAAGCTTTTAAAGACGCACAAATCA
CAGTTGTGGAGTCAAAACTTTCTACTGGAAATGATATGGTATTTCACACA
TTTGTAATCAAATCTCAGGGATCGGAGCAGTTGACAAAAGAGAAGTTGAT
TGCAGCATTTTCCTGCGAATCAAGCTCAATACAGCCATTATCATCAGTTG
GGTAGCGGCAGTAGCAGTAAGAATGGCATTTAACTTAGTGATAGCATAAA
ATGTGGAGAAGAACAATTCAAAAGTTTCTTCTTCGGTTTTGTTATACGGC
AAAGGATTCTGAGTGGAAACAGCAGGTCCAGTTAGAATTAGAAAATAACT
ACTTATTGACATTTAGGGCAGCAATTTTTCTGTGAATGTTTATATTATAC
ATATTTTGTCATAAGGAAGTTTTTTGCAAGATGAATTAAATTTGTAAGTT
TAACCAACTCTATCATCGTTGGTTATTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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