CK935477

Overview
NameCK935477
Unique NameCK935477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935477 vs. ExPASy Swiss-Prot
Match: S35A3_RAT (UDP-N-acetylglucosamine transporter OS=Rattus norvegicus GN=Slc35a3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 62/243 (25.51%), Postives = 108/243 (44.44%), Query Frame = 3
Query:  180 SLLLTLQYGVQPLISKRCIRRE---VIVTTSVLTCELAKVIFALIFMAKEG-----TLKKLSSQWTLVGSLTASGL--PATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIILRQRQSMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDQILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPXIFNS 878
            SL+LT++Y        R ++ E    + +T+V+  E  K++  +  + K+      TL ++     L   +    L  P+ IY LQN+LL ++  NLD+ T+ +  Q KI+ TALF+  +L ++  M Q                                 F G++ VL+A   SG A    +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT I  +  +
Sbjct:   19 SLVLTMRYS-------RTLKEEGPRYLSSTAVVVAEFLKIMACIFLVYKDSKCSVRTLNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLGKKLGMYQWLSLVILMAGVAFVQWPSDSQELNSKDLSTGSQFVGLMAVLIACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVY-DGELVSKNGFFQGYNQLTWIVVVLQA 253          
BLAST of CK935477 vs. ExPASy Swiss-Prot
Match: S35A3_CANFA (UDP-N-acetylglucosamine transporter OS=Canis familiaris GN=SLC35A3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 60/243 (24.69%), Postives = 106/243 (43.62%), Query Frame = 3
Query:  180 SLLLTLQYGVQPLISKRCIRRE---VIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTAS-------GLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIILRQRQSMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDQILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPXIFNS 878
            SL+LT++Y        R ++ E    + +T+V+  EL K++  ++ + K+      +    L   +           +P+ IY LQN+LL ++  NLD+ T+ +  Q KI+ TALF+  +L ++  + Q                                 F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT I  I  +
Sbjct:   19 SLVLTMRYS-------RTLKEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRILHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQELDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGV-YIYDGELVSKNGFFQGYNRLTWIVVILQA 253          
BLAST of CK935477 vs. ExPASy Swiss-Prot
Match: S35A3_BOVIN (UDP-N-acetylglucosamine transporter OS=Bos taurus GN=SLC35A3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 59/243 (24.28%), Postives = 106/243 (43.62%), Query Frame = 3
Query:  180 SLLLTLQYGVQPLISKRCIRRE---VIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTAS-------GLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIILRQRQSMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDQILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPXIFNS 878
            SL+LT++Y        R ++ E    + +T+V+  EL K++  ++ + K+      +    L   +           +P+ IY LQN+LL ++  NLD+ T+ +  Q KI+ TALF+  +L ++  + Q                                 F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT I  +  +
Sbjct:   19 SLVLTMRYS-------RTLKEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRILHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQELNSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVY-DGELVSKNGFFQGYNRLTWIVVVLQA 253          
BLAST of CK935477 vs. ExPASy Swiss-Prot
Match: S35A3_HUMAN (UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35A3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 59/243 (24.28%), Postives = 106/243 (43.62%), Query Frame = 3
Query:  180 SLLLTLQYGVQPLISKRCIRRE---VIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTAS-------GLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIILRQRQSMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDQILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPXIFNS 878
            SL+LT++Y        R ++ E    + +T+V+  EL K++  ++ + K+      +    L   +           +P+ IY LQN+LL ++  NLD+ T+ +  Q KI+ TALF+  +L ++  + Q                                 F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT I  +  +
Sbjct:   19 SLVLTMRYS-------RTLKEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGS-QFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGV-YIYDGELVSKNGFFQGYNRLTWIVVVLQA 252          
BLAST of CK935477 vs. ExPASy Swiss-Prot
Match: S35A3_MOUSE (UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35a3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 58/237 (24.47%), Postives = 102/237 (43.04%), Query Frame = 3
Query:  180 SLLLTLQYGVQPLISKRCIRRE---VIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTAS-------GLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIILRQRQSMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDQILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI 860
            SL+LT++Y        R ++ E    + +T+V+  E  K++  +  + K+      +    L   +           +P+ IY LQN+LL ++  NLD+ T+ +  Q KI+ TALF+  +L ++  + Q                                 F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT I
Sbjct:   19 SLVLTMRYS-------RTLKEEGPRYLSSTAVVVAEFLKIMACIFLVYKDSKCSVRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLGKKLGVYQWLSLVILMAGVAFVQWPSDSQELNSKDLSTGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVY-DGELVSKNGFFQGYNQLTWI 247          
The following BLAST results are available for this feature:
BLAST of CK935477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
S35A3_RAT2.229e-1225.51UDP-N-acetylglucosamine transporter OS=Rattus norv... [more]
S35A3_CANFA8.471e-1224.69UDP-N-acetylglucosamine transporter OS=Canis famil... [more]
S35A3_BOVIN8.471e-1224.28UDP-N-acetylglucosamine transporter OS=Bos taurus ... [more]
S35A3_HUMAN1.887e-1124.28UDP-N-acetylglucosamine transporter OS=Homo sapien... [more]
S35A3_MOUSE3.219e-1124.47UDP-N-acetylglucosamine transporter OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004555_C04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935477 ID=CK935477; Name=CK935477; organism=Citrus sinensis; type=EST; length=880bp
GGGGATCTCGTCGTCGTAGTCTTTTCTTCGCACGCGAAGTAGGAATTTCA
ACAAATAGACAGAGAAAACTGCCACGGTCTGGATCGGAGTCGCCGGCAAT
GGCGACGGTGAAGACCAAGGTTAAAACCGGGCCCACACAAACAAGCATGC
AAAAAACGAGCGCAAGGGTTTTTCTTTACTCTCTTTTGCTCACCCTTCAA
TATGGCGTTCAGCCTTTGATCTCCAAACGTTGCATTAGACGAGAAGTTAT
TGTGACTACATCTGTTTTAACATGCGAGCTTGCAAAGGTTATATTTGCGT
TAATTTTCATGGCTAAAGAAGGTACTTTAAAGAAACTATCTAGTCAATGG
ACTTTGGTTGGTTCATTGACCGCATCAGGACTTCCTGCCACCATTTATGC
ACTGCAGAACAGCTTGCTGCAGATATCCTACAGGAATCTTGATTCACTGA
CATTCTCCATGTTGAACCAAACAAAAATTATCTTTACAGCTTTGTTCACA
TATATAATATTGAGGCAGAGGCAATCAATGCAACAAATTGTTGCCGTGTT
CTTGTTGATCCTGGCAGCTGTTTTTTTAAGTATTGGTGAAGGCTCTAGCG
AACGTTCTAGCTCTGGTGACCCTGACCAAATTCTGTTTTATGGGATTGTT
CCTGTCTTGGTTGCTTCTGTTCTCTCAGGTCTGGCTTCTGCTTTGTGTCA
ATGGGCCTCCCAGGTTAAGAAACACTCATCATACTTGATGACTATAGAGA
TGTCTATTGTCGGAAGCCTGTGTTTGTTAGCTAGTATCTCTAAGTCTCCA
GACGGAGAAGCTATAAGACAACATGGATTCTTTTATGGTTGGACTCCACT
GACACTGATTCCANNNATATTCAATTCTCT
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