CK935672

Overview
NameCK935672
Unique NameCK935672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.679e-52
Identity = 105/146 (71.92%), Postives = 114/146 (78.08%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSVD 510
            MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI  SKVVIT                           TKFT ED+MQ+VD
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD 146
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.136e-51
Identity = 101/146 (69.18%), Postives = 115/146 (78.77%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSVD 510
            MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N+S V+IT                           TKF+ ED+M++VD
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMENVD 146
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.006e-46
Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSV 507
            MKYNPRV+SSRR+NRK HFTA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+  +KVVIT                           TKFT  D+MQ+V
Sbjct:    1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQNV 145
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.245e-38
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK+NP V+S R KNRK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.946e-38
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI  SKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107
[Close]
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK  P V+S R KNRK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 MKSYPFVTSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL261_ARATH1.679e-5271.9260S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH4.136e-5169.1860S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA4.006e-4664.8360S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN5.245e-3873.8360S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE6.850e-3872.9060S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA6.850e-3872.9060S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN6.850e-3872.9060S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN6.850e-3872.9060S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT8.946e-3872.9060S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME1.094e-3571.0360S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bp
GGGGAGCCTCTCCCAGTTCTTCCTCTAGCTGCCGCTGTTGTAAAACCCTA
GGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAGGGTGTCATCCT
CTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTTCCAGCGTGCGC
CGCATCTTGATGAGCGCGCCGCTGTCCACAGACCTCCGTCAGAAGTACAA
CGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTTCAGGTTGTGCGTG
GGACCTACAAGGGGCGCGAGGGCAAGGTCGTTCAAGTGTATCGCCGGAAG
TGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCAC
TGTGAATGTGGGAATCAACTCATCAAAGGTCGTGATCACCAAGCTCCGTC
TGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCC
GCCGCCGACAAGGAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCA
GAGCGTTGACTAATTTTGATAAGAGGTTGTTTTTAAAGTTTTTGTTTAAT
CATAGAATTTATGGATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGAT
ATTTCTATTGTTATTGTGTTATGTCATGAGGATCCGATTATGGGCTTATG
TTGGAGATTTAAGATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTTT
AATTCTATATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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