CK935896

Overview
NameCK935896
Unique NameCK935896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935896_ssr779 microsatellite CK935896_ssr779:779..793. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: NUD26_ARATH (Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.207e-80
Identity = 138/194 (71.13%), Postives = 164/194 (84.54%), Query Frame = 3
Query:   99 NYPHKLPKSTNLPLVHH--QNQICSSSY----SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 662
            NYP K  K ++LP +H   ++++ SSS     SM++PPEGYRRNVG+CL+NSSKKIF ASRLDIP +WQMPQGGIDE EDP+VA +RELKEETGV SAE+LAE P+W+TYDFPP+VREKLK +WG DWKGQAQKWFLLKFTGK+EEINLLGD +EKPEFGEW W SP+Q++E AV+FKKPVYKEV + F  HLQ
Sbjct:   23 NYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHLQ 216          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: NUD27_ARATH (Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.206e-60
Identity = 111/190 (58.42%), Postives = 141/190 (74.21%), Query Frame = 3
Query:  123 STNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ*YYVGIVRDS 692
            S+  PLV     + S + ++++PP GYR+NVGICL++  +KIF AS++ IPD+WQMPQGG DE ED + AA REL+EETGV+SAE +AE+P WLTYDFP EV++KL  +W   +KGQAQKWFL KFTGKEEEINLLGD + KPEF  W WM PEQ++E AV FK+PVY+ V   F P    Y+V   +DS
Sbjct:   36 SSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDGTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNP----YFVDEEKDS 221          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: NUD25_ARATH (Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.062e-52
Identity = 91/158 (57.59%), Postives = 122/158 (77.22%), Query Frame = 3
Query:  180 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEE--EINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            M+  P GYR NVG+CLINS   +F ASRL++P +WQMPQGGI++ EDPK AA+REL+EETGV SAE+++EVP WLTYDFPP V+ K+   WGG+W GQAQKW+L++    E+  EINL  ++++  EF EWKW  PE+++E+AVD+K+P Y+EV   F
Sbjct:    1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEETGVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLANNEADS-EFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTF 157          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHORT (RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rppH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.028e-36
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEV 635
            YR+ VGI LIN+  ++F A RLD P++WQMPQGGID  EDP+ AA RE++EE G  +A +L E   WL YD P E+R +L   WGG ++GQ QKWF  +FTG++ +INL    +  PEF  W+W+  + ++   V FK+PVY++V
Sbjct:   14 YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNALLLGETAGWLGYDLPEELRGRL---WGGRFQGQRQKWFAFRFTGQDADINL---ATAHPEFDAWRWVDVDTLVALIVPFKRPVYEQV 152          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOSK (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.343e-35
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            YR  VGI LIN    IFA  R+D P  +WQMPQGGIDE E P+ AALREL EETG+ +   E +A+ P W+TYD PPE+   L   WGG ++GQ QKWFL ++ G +EE+   G  ++  EF  W+W+  E+++   V FK+ VY+EV   F PHL
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEV---GIGTDHAEFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOS4 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.343e-35
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            YR  VGI LIN    IFA  R+D P  +WQMPQGGIDE E P+ AALREL EETG+ +   E +A+ P W+TYD PPE+   L   WGG ++GQ QKWFL ++ G +EE+   G  ++  EF  W+W+  E+++   V FK+ VY+EV   F PHL
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEV---GIGTDHAEFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_DINSH (RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12) GN=rppH PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.290e-35
Identity = 72/156 (46.15%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            YR+ VG+ L + + ++F   R D    +WQMPQGGI++ ED + AALREL EETGV+    EVLAE P W+ YD PPE+  ++   W G +KGQAQ+W L+KF G + +IN+   +++ PEF EW+W+ P  +L+  V FK+ VY++VF  F+  L
Sbjct:   11 YRKCVGVVLWDGAGRVFTGQRYDSELPAWQMPQGGIEDGEDARTAALRELVEETGVAVEKVEVLAETPDWIKYDLPPEIVPRI---WKGRYKGQAQRWVLMKFLGSDADINI---ETKHPEFSEWRWLEPASVLDSIVPFKRDVYEQVFDAFSDWL 160          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOS1 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rppH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.991e-35
Identity = 76/156 (48.72%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            YR  VGI LIN    IFA  R+D P  +WQMPQGGIDE E P+ AALREL EETG+ +   E +A+ P W+TYD PPE+   L   WGG ++GQ QKWFL ++ G ++E+   G  ++  EF  W+W+  E+++   V FK+ VY+EV   F PHL
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEV---GIGTDHAEFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOS5 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rppH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.103e-35
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            YR  VGI LIN    IFA  R+D P  +WQMPQGGID +E P+ AALREL+EETG+     E +A+ P W+TYD PP++   L   WGG ++GQ QKWFL ++ G +E+I   G  +E  EF  W+W+  E+++   V FK+PVY+ V  +F  HL
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDLVEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQI---GIATEHAEFSCWRWIGAEEMVASIVPFKRPVYERVVAMFREHL 161          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_SILPO (RNA pyrophosphohydrolase OS=Silicibacter pomeroyi GN=rppH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.623e-34
Identity = 70/156 (44.87%), Postives = 102/156 (65.38%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDI-PDSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            YR  VG+ L+N    +F   R+D   D+WQMPQGG+DE+EDP  AALREL EETGV++   E++AE   WL YD P ++  ++   W G ++GQ QKW+L +F G++++I+L   ++  PEF  WKW  P++++   V FK+ VY+ V   F PHL
Sbjct:   11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADLVEMVAETDGWLPYDLPHDLVPRI---WKGRYRGQEQKWYLFRFLGRDDQIDL---ETGHPEFSRWKWQDPDRLVAEIVPFKRDVYERVVAAFAPHL 160          
The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
NUD26_ARATH5.207e-8071.13Nudix hydrolase 26, chloroplastic OS=Arabidopsis t... [more]
NUD27_ARATH1.206e-6058.42Nudix hydrolase 27, chloroplastic OS=Arabidopsis t... [more]
NUD25_ARATH2.062e-5257.59Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT... [more]
RPPH_RHORT6.028e-3648.97RNA pyrophosphohydrolase OS=Rhodospirillum rubrum ... [more]
RPPH_RHOSK1.343e-3549.36RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_RHOS41.343e-3549.36RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_DINSH2.290e-3546.15RNA pyrophosphohydrolase OS=Dinoroseobacter shibae... [more]
RPPH_RHOS12.991e-3548.72RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_RHOS55.103e-3548.08RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_SILPO9.623e-3444.87RNA pyrophosphohydrolase OS=Silicibacter pomeroyi ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_C10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bp
GGGGAATGGCTTTATGTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTT
CATCTTTCTTCTCTCCTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAA
TTACCCTCATAAACTCCCCAAATCTACTAACCTGCCACTCGTTCATCATC
AGAATCAAATTTGCTCATCATCATACTCCATGGACGCTCCTCCAGAAGGT
TACCGAAGAAATGTCGGCATCTGTCTCATCAATTCTTCCAAAAAGATTTT
CGCCGCTTCGAGACTTGACATACCTGATAGTTGGCAAATGCCACAGGGCG
GTATTGACGAGAATGAGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAA
GAAGAAACAGGAGTCAGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTG
GTTGACATATGACTTCCCTCCAGAAGTCAGGGAAAAACTTAAACATCAAT
GGGGAGGTGACTGGAAAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTC
ACTGGCAAGGAGGAAGAAATCAATCTTCTTGGTGATAAATCTGAGAAACC
TGAGTTTGGCGAGTGGAAGTGGATGTCACCAGAACAAATACTTGAGCGTG
CTGTGGATTTCAAGAAACCTGTTTACAAAGAAGTTTTTACGGTTTTCACA
CCTCATCTTCAATAATATTATGTTGGAATTGTCCGAGATTCTGCAAAACT
GGGTGATAAATTGATTTGTTGAGTCACTAACTTTTCAAAGTCTTTATTGG
ATATCACATACATATCAACTGCCTTGTAATGATATGATATGATATTCTTG
TGATCGATGAAAGAAATAAAATTAAATAACCTTATTAGCAA
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