CK935908

Overview
NameCK935908
Unique NameCK935908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:38..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935908 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 52/132 (39.39%), Postives = 70/132 (53.03%), Query Frame = 1 
Query:  190 FTGMKPQSLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 579
            FT  K   LVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CK935908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH6.161e-1539.39Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004389_C08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935908 ID=CK935908; Name=CK935908; organism=Citrus sinensis; type=EST; length=869bp
GGGGATCCTCATTTCGTTTTATCTCTTCTTCTCTCTCTTTCGTTTTCTCT
CTCTTTCTCTCTCTTTCTCTCTCCTAGGGTCAGGTTTCTTTCCTTTGTCT
AGACTCCAAAACTCTCTCGCTCAATGGCTGATGTCCAGGAGGTTCAGAAT
GGAGCTGCGCCGGAGAAGGCTCCTGCCACCGCGGCCAGCTTCACGGGGAT
GAAGCCGCAGTCGCTTGTGGAAGCACCGAAGGCTACTGACGCTGTTCAGT
TCTACAAGACCGCGTTTGGTGCTGTGGAGATCGGCCGTAGCGTGGAAACC
AAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTCAACTGGA
GATTGCCGGCTCCACCTTCCTTGTCTCTGACGTTTCCGGTGACTCTGCTG
CTGCACAGACCGTGGGGACCGGATGCGTGCTTTGCTTGGAGACCGAGGAC
GTGGAGGCTGCCGTCGCCAAGGCTGTGAGTGCTGGAGCTGTTGCTGAGGG
TGAGCTCGCTGAAGGCAACGGCGCGTGTTGTGGAGAGCGCGTGGGAAAGG
TCAAAGATCCTTATGGCTTCACTTGGCTCATTTGCTCCCCGGTCAAGAAG
TGCGCTGGCGTGGAAGCTTAAGAGCCGCCTGATCTGATGATCTTTAGATA
TTGATCTACTATCACATAACTCTCTTTTGTCGTTCGTCTTTTCTGCTGTG
GGTTTATAGCTCTAGGCTTTTTTAGTATTTCGGATATCTTGATGATATTG
CTGAACGTTGATCATGATGAAGGATGTTTTTGATTAATTTTGAAGGAACT
GACAGCTGGCAGTTATAGACTTCTTGCTACTCTTATTATCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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