CK935966

Overview
NameCK935966
Unique NameCK935966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935966_ssr266 microsatellite CK935966_ssr266:266..275. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6272 contig Csv1_Contig6272:21..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.497e-70
Identity = 141/230 (61.30%), Postives = 172/230 (74.78%), Query Frame = 2
Query:   92 MATSLTFSKFLXXXXXXXXXXXXXXXXLFSPKSLHSLPHPLK-NLSLRHRLLAKPATTKLSLSTNATPVSAAISVGDKLPDATLSYFD-SAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            MATSL+ S+F+                  S  +  S    L  NLSL+ R     + +  + S   TPV+A+ISVGDKLPD+TLSY D S G+++T+TVS LT+ KK ILFAVPGAFTPTCSQKH+PGFV K+ EL+SKG+D++ACISVNDAFVM AW+++LGINDEV+LLSDGNG FT  +G ELDL DKP+GLGVRSRRYA+LA++GVVKVLNLEEGGAFT S AEDM
Sbjct:    1 MATSLSVSRFMSSSATVISVAKPLLSPTVSFTAPLSFTRSLAPNLSLKFRNRRTNSASATTRSFATTPVTASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDM 230          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.049e-68
Identity = 138/205 (67.32%), Postives = 163/205 (79.51%), Query Frame = 2
Query:  200 LPHPLKNLSL----RHRLLAKP--------ATTKLSLSTNATPVSAAISVGDKLPDATLSYFDSA-GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            L  P ++LSL    R R+   P        A  + ++S +A P +A I+VGDKLPDATLSYFDS  GEL+T+TV DLT+ KK +LFAVPGAFTPTC+QKH+PGFV K+ EL++KGVD VAC+SVNDAFVMRAWKE+LG+ DEVLLLSDGNG   +A+G ELDLSDKP GLGVRSRRYALLAE+GVVKVLNLEEGGAFT S AE+M
Sbjct:   25 LSSPSRSLSLSLASRGRIAVMPHLRAGILSAAPRRAVSASA-PAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEM 228          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.283e-66
Identity = 126/169 (74.56%), Postives = 151/169 (89.35%), Query Frame = 2
Query:  275 STNATPVSAAISVGDKLPDATLSYFDSA-GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            + +A+ V A I+VGDKLPDATLSYFD A GEL+T+TV++LT+ +KA+LFAVPGAFTPTCSQKHLPGF+EK+ EL +KGVD +AC+SVNDAFVMRAWKE+LG+ D +VLLLSDGN   T+A+G E+DLSDKPMGLGVRSRRYALLA++GVVKVLNLEEGGAFT S AE+M
Sbjct:   53 AASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEM 221          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.630e-45
Identity = 91/159 (57.23%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  299 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            A I+VGD +PD T+S+FD   +LQT +V  L + KK ILF VPGAFTPTCS KH+PGF+EK+ ELKSKGVD + C SVND FVM+AW +    N  V  ++DG+G +T  +G ELDL DK  GLGVRSRR+ALL ++  V V N+E GG FT S A+D+
Sbjct:    2 APIAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDI 158          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.129e-45
Identity = 88/159 (55.35%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  299 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            A ++VGD LPD  L +FD   +LQ ++V  L + KK +LF VPGAFTPTCS +H+PGF+ ++ +LK+KGVD +  +SVND FVM+AW ++   N  V  L+DG G +TKA+G ELDLS+K  GLG+RSRR+ALLA+N  V V N+EEGG FT SGAE++
Sbjct:    2 APVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEK--GLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEI 158          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.743e-45
Identity = 88/159 (55.35%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  299 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            A I+VGD +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVM+AW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+
Sbjct:    2 APITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDI 158          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.743e-45
Identity = 88/159 (55.35%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  299 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 775
            A I+VGD +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVM+AW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+
Sbjct:    2 APITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDI 158          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 73/149 (48.99%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  299 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 745
            A I VGD +PD ++S+FD   +LQT++V  L + KK ILF VPGAF PTCS  H+ GF+EK+ ELKS GVD + C+S +D F++ A  E    N  V  + DG+G + + +G EL++ DK  GLGVRSR +ALL +N  V V+N+  GG
Sbjct:    2 APIDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSE----NKHVKFVEDGSGEYIQLLGLELEVKDK--GLGVRSRGFALLLDNLKVIVVNVGSGG 144          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRDX5_MOUSE (Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.931e-26
Identity = 65/159 (40.88%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  269 SLSTNATPVSAAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 745
            S S++A  + A I VGD +P   +   +     + + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG  +VAC+SVND FV+  W        +V LL+D  G F KA    LD S   +    R +R++++ +NG+VK LN+E  G
Sbjct:   41 SFSSSAVTM-APIKVGDAIPSVEVFEGEPG---KKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVIEEWGRAHQAEGKVRLLADPTGAFGKATDLLLDDSLVSLFGNRRLKRFSMVIDNGIVKALNVEPDG 195          
BLAST of CK935966 vs. ExPASy Swiss-Prot
Match: PRDX5_PAPHA (Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.447e-25
Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  278 TNATPVSAAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 745
            + A    A I VGD +P   +   +   +   + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV ++AC+SVNDAFV   W     +  +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E  G
Sbjct:   48 SRAAAAMAPIKVGDAIPAVEVFEGEPGNK---VNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKVEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDG 200          
The following BLAST results are available for this feature:
BLAST of CK935966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRX2E_ARATH2.497e-7061.30Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E1_ORYSJ1.049e-6867.32Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PR2E2_ORYSJ1.283e-6674.56Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2B_ARATH1.630e-4557.23Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ORYSJ2.129e-4555.35Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2D_ARATH4.743e-4555.35Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ARATH4.743e-4555.35Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2A_ARATH9.277e-3348.99Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PRDX5_MOUSE4.931e-2640.88Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=... [more]
PRDX5_PAPHA2.447e-2539.74Peroxiredoxin-5, mitochondrial OS=Papio hamadryas ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004388_E07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935966 ID=CK935966; Name=CK935966; organism=Citrus sinensis; type=EST; length=777bp
GGGGGCGCACNNNAGACACAAAGAAACANNAAGCTTCCGCTTTACCTCAA
TCTCAGAATCCTCACCCACTTCCATTGTTCGCTCCGCCAAAATGGCAACC
TCTCTTACATTCTCCAAATTCCTCTCCTCCGCCGCCGTTGCCGCCACTTC
CACTGCCGCCGTCAAATCCTCTCTCTTCTCGCCTAAATCCCTCCATTCCC
TCCCTCACCCACTCAAAAATCTCTCCCTCCGCCACCGCCTCCTCGCAAAA
CCCGCCACCACAAAACTCTCTCTCTCCACCAACGCCACGCCAGTCTCCGC
CGCCATTTCCGTGGGCGACAAGCTCCCCGACGCCACCCTCTCCTACTTCG
ACTCCGCTGGCGAGCTCCAGACCATCACCGTCTCCGACCTCACCTCCAAT
AAAAAAGCAATCCTCTTCGCCGTCCCCGGCGCCTTCACCCCCACCTGCTC
CCAAAAACACCTCCCGGGCTTCGTCGAGAAATCCGCCGAGTTGAAATCCA
AAGGCGTCGACATCGTCGCCTGCATTTCCGTGAACGACGCCTTCGTTATG
AGGGCCTGGAAGGAGAATCTTGGAATCAACGATGAAGTGCTTTTGTTGTC
TGATGGGAACGGGGTGTTCACTAAGGCTATTGGCTGTGAGCTCGACTTGA
GTGACAAGCCTATGGGATTGGGAGTTAGGTCCAGGAGGTACGCCCTTTTG
GCAGAAAACGGCGTCGTTAAGGTGCTCAATTTGGAGGAGGGCGGCGCCTT
TACTTTCAGCGGAGCTGAGGACATGCT
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