CK936044

Overview
NameCK936044
Unique NameCK936044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936044_ssr45 microsatellite CK936044_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.496e-75
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 2
Query:  134 KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAV 670
            KIG+IRAAIPKHCWVK+P RS+SYV RD            +F++WF WPLYWVAQGT+FWAIFVLGHDCGHGSFS+ PLLNS VGHILHS ILVPY+GWRISHRTHHQNHG+VE+DESWVP+PEK+Y  L  STR+LR++            WYRSPGK+GSHFNPYSSLF+P ERK +
Sbjct:   32 KIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKLYKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKEGSHFNPYSSLFAPSERKLI 210          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.971e-74
Identity = 127/180 (70.56%), Postives = 138/180 (76.67%), Query Frame = 2
Query:  134 KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            KI +IRAAIPKHCW K+  RSLSYVLRD             FN+WFFWPLYW AQGTMFWA+FVLGHDCGHGSFS S  LNSFVGHILHS ILVPYNGWRISHRTHHQNHG+VE DESWVP+ EK+Y  LD  TR+LR+S            W RSPGK+GSHFNPYS+LFSPGERK VV
Sbjct:   31 KIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKEGSHFNPYSNLFSPGERKGVV 210          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.178e-73
Identity = 121/179 (67.60%), Postives = 142/179 (79.33%), Query Frame = 2
Query:  134 KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAV 670
            KIG+IRAAIPKHCWVK+P RS+SYV+RD            + ++WF WPLYW AQGT+FWAIFVLGHDCGHGSFS+ PLLNS VGHILHS ILVPY+GWRISHRTHHQNHG+VE+DESWVP+PE++Y KL  STR+LR++             YRSPGK+GSHFNPYSSLF+P ERK +
Sbjct:   35 KIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLI 213          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.077e-72
Identity = 128/212 (60.38%), Postives = 147/212 (69.34%), Query Frame = 2
Query:   41 MEKERKLKNEESANGVVEKGXXXXXXXXXXX--KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAV 670
            M K+ K     + NG  +KG             KI EIRA+IPKHCWVKNPWRSLSYVLRD            HF+ W  W +Y   QGTMFWA+FVLGHDCGHGSFS+SPLLNS VGHILHSSILVPY+GWRISHRTHHQNHG++E DESWVP+ EKIY  LDS TR++RF+            + RSPGK+GSHFNPYS+LF P ERK +
Sbjct:    1 MVKDTKPLAYAANNGYQQKGSSFDFDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGI 212          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.553e-70
Identity = 126/223 (56.50%), Postives = 149/223 (66.82%), Query Frame = 2
Query:   17 SVSLLAAAMEKERKLKNEESANGVVE----KGXXXXXXXXXXXKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            +VS ++   ++ER     E  NG+V     KG            + +IRAAIPKHCWVKNPWRS+SYVLRD            +FN W  WPLYW  QGTMFWA+FVLGHDCGHGSFS +P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+ EKI+  LD+ T+ LRFS            W RSPGK GSHF+P S LF P ERK ++
Sbjct:   73 NVSTVSGEDDRER-----EEFNGIVNVDEGKGEFFDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFKSLDNVTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDII 290          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.288e-69
Identity = 121/218 (55.50%), Postives = 145/218 (66.51%), Query Frame = 2
Query:   20 VSLLAAAMEKERKLKNEESANGVVEKGXXXXXXXXXXXKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            VS     ++ E + +N+E    V+  G           K+ +IR AIPKHCWVK+PWRS+ YV+RD            +FN W  WPLYW AQ TMFWA+FVLGHDCGHGSFS  P LNS VGHILHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+ EKIY  LD++T+ LRF+            W RSPGK GSHF+P S LF P E+K V+
Sbjct:   64 VSAPLRVLQVEEEEENKEGER-VINGGEEFDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTLPFPLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVI 280          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.213e-69
Identity = 116/179 (64.80%), Postives = 132/179 (73.74%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            + +IRAAIPKHCWVKNPW+SLSYV+RD            + N W  WPLYW+AQGTMFWA+FVLGHDCGHGSFS  P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW PM EKIY+ LD  TR  RF+            W RSPGK GSH++P S LF P ERK V+
Sbjct:   98 LADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERKDVL 276          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.121e-68
Identity = 117/180 (65.00%), Postives = 134/180 (74.44%), Query Frame = 2
Query:  134 KIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            ++ EIR  IPKHCWVK+P RSLSYV+RD            H ++W F+PLYW  QGTMFWAIFVLGHDCGHGSFS+S LLN+ VGHILHS+ILVPY+GWRISH+THHQNHGNVE DESWVPMPEK+Y+K+  ST+ LR+               RSPGK GSHFNPYS LF P ERK VV
Sbjct:   31 RLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPLLAYPMYLMKRSPGKSGSHFNPYSDLFQPHERKYVV 210          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.080e-68
Identity = 113/179 (63.13%), Postives = 130/179 (72.63%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            + +IRAAIPKHCWVKNPW+S+SYV+R+            + N W  WPLYW+AQGTMFWA+FVLGHDCGHGSFS  P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW PM EKIY  LD  TR  RF+            W RSPGK GSH++P S LF P ER  V+
Sbjct:   56 LADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYKSLDKPTRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERNDVL 234          
BLAST of CK936044 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.549e-67
Identity = 111/179 (62.01%), Postives = 131/179 (73.18%), Query Frame = 2
Query:  137 IGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVV 673
            + +IRAAIPKHCWVKNPW S+SYV+RD            +FN W  WPLYW AQGTMFWA+FVLGHDCGHGSFS  P LNS  GH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+PE IY  L+ +T++ RF+            W RSPGK GSH++P S LF P E+K V+
Sbjct:   91 LADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVL 269          
The following BLAST results are available for this feature:
BLAST of CK936044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3E_BRANA4.496e-7569.27Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU4.971e-7470.56Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH7.178e-7367.60Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN6.077e-7260.38Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO2.553e-7056.50Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SESIN6.288e-6955.50Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_ARATH8.213e-6964.80Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_TOBAC3.121e-6865.00Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA9.080e-6863.13Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3D_ARATH1.549e-6762.01Temperature-sensitive omega-3 fatty acid desaturas... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004387_D11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936044 ID=CK936044; Name=CK936044; organism=Citrus sinensis; type=EST; length=673bp
AAGCTCATTTCACTTCTCGGTTTCTTTGCTTGCTGCTGCAATGGAGAAAG
AAAGAAAGCTCAAGAATGAAGAGAGTGCCAATGGGGTTGTTGAGAAAGGA
GATTTCTTTGACCCGGCAGCTCCTCCTCCATTCAAGATTGGCGAGATCCG
TGCTGCCATTCCAAAGCATTGCTGGGTCAAGAATCCATGGAGGTCTTTGA
GCTATGTACTCAGAGATTTGCTTGTGGTTCTTGCATTGCTAGCTGCTGCT
ACTCACTTCAACACTTGGTTCTTTTGGCCTCTCTATTGGGTTGCTCAAGG
AACCATGTTCTGGGCTATTTTTGTTCTTGGCCATGACTGTGGCCATGGAA
GCTTTTCGGAAAGTCCTTTGCTGAACAGCTTTGTGGGACACATCCTGCAT
TCGTCAATTCTTGTACCTTACAACGGATGGAGAATTAGCCACAGAACACA
TCACCAAAACCATGGCAACGTTGAACATGATGAATCTTGGGTGCCGATGC
CTGAGAAGATTTACAGTAAATTGGATTCTAGTACAAGGATTCTGAGATTC
TCATTGCCTTTACCCATGTTAGCATACCCTGCATATCTGTGGTACCGAAG
TCCTGGAAAGGATGGATCTCATTTCAATCCTTACAGCAGTTTGTTTTCGC
CAGGGGAGAGAAAAGCAGTGGTG
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