CK936073

Overview
NameCK936073
Unique NameCK936073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936073 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  354 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSS 752
            P LP N+ ++TW                  +LE+LYQAV +LC +K+  NLY+++ + CE+HI A I      S D V+FL  ++RCWQ+ C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S
Sbjct:  188 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIIS 320          
BLAST of CK936073 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  354 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSS 752
            P LP N+ +DTW                  +LE+LYQAV +LC HK+   LY+++ + CE+H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S
Sbjct:   52 PRLPDNYTQDTWRKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVSPTLYKQLRQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRNHIIS 184          
BLAST of CK936073 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  354 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSS 752
            P LP N+ +DTW                  +LE+LYQAV +LC HK+   LY+++ + CE+H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S
Sbjct:   52 PRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIIS 184          
BLAST of CK936073 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  354 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHK-MGGNLYQRIEKECEEHISAAIRSLV-GQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPN-VRSLWDMGLQLFRKYLS 749
            P  P N+E+ +W             Q T+   E+LY+ V +LC  K +  NLY +I  + E+HI+  I+ LV   S D ++FL  +   W+D  +QM+MIR I LYLDRTYV Q  N V+S+WD+GL  F   LS
Sbjct:   60 PKTPDNYEDSSWNKLSSAITSINMKQATTLTQEELYKMVENLCFDKILASNLYNKISVQIEKHITLTIKHLVLTMSSDPIIFLKSINSIWKDHTNQMIMIRSIFLYLDRTYVIQNSNTVKSIWDLGLFYFGNNLS 194          
The following BLAST results are available for this feature:
BLAST of CK936073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CUL4B_HUMAN3.881e-2844.36Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_MOUSE1.129e-2744.36Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL4A_HUMAN1.129e-2744.36Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4_DICDI1.337e-2040.74Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004387_B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936073 ID=CK936073; Name=CK936073; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTTTTTCAATTTGCAGTGAGTGAATTAAAAATGCACTAA
TAAACGACCTATTTCATGTCTCTCCCCAACAAACGCACAGCCAGCAACAA
CAACAGCAACAATTATTCACCTTCGGCAATGAGGAAGGCCAAGTCCCAAG
CCGTGGCCTGCTCTGTGGACACCGCCAACAAGAACGGTCTCCACCACGAC
AACGACGCCGTTTTCGATCCCTCTTCTATTTCTCTCGATGACGATCTTAA
GCCCGACGAACCCCGACAACAAGCCGCCGCCAATTTATCCCGCAAAAAAG
CCCAGCCCCCTCAGCCCGCCAAAAAACTTGTCATCAAGCTCCTCAAAGCT
AAACCCACACTGCCTACAAATTTTGAGGAGGATACATGGGCAAAGCTGAA
GTTAGCTATAAAAGCAATATTCTTGAAGCAACCAACTTCCTGTGATTTGG
AAAAGCTATATCAGGCTGTCAATGATCTTTGCCTGCACAAGATGGGGGGA
AACCTTTATCAGCGAATTGAAAAGGAGTGTGAAGAACATATATCTGCTGC
AATTCGATCGTTGGTCGGTCAAAGCCCTGACTTGGTGGTTTTCTTATCAC
TGGTTGAGAGATGCTGGCAGGATCTTTGTGATCAGATGTTGATGATTCGT
GGTATAGCTTTGTATCTAGATAGAACATATGTGAAACAAACACCAAATGT
GCGTTCATTGTGGGACATGGGATTGCAGCTTTTCCGGAAATATCTTTCTT
CATATT
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