CK936090

Overview
NameCK936090
Unique NameCK936090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936090 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   94 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 258
            MAGHKIAHATLKGPSVVKE+             WKM+ WN QRK+RVFYDLLE+G
Sbjct:    1 MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERG 55          
BLAST of CK936090 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   94 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 258
            MAGHK+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55          
BLAST of CK936090 vs. ExPASy Swiss-Prot
Match: CX5C1_ARATH (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   94 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 258
            MAGHK+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55          
BLAST of CK936090 vs. ExPASy Swiss-Prot
Match: COX5C_ORYSJ (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   94 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 258
            MAG +IAHATLKGPSVVKEIC            WKM+ WN QRK+R FYD+LEKG
Sbjct:    1 MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKG 55          
BLAST of CK936090 vs. ExPASy Swiss-Prot
Match: COX5C_HORVU (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   94 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 258
            MAG ++AHATLKGPSVVKEI             WKM+ WN QRK+R FYD+LEKG
Sbjct:    1 MAGGRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKG 55          
BLAST of CK936090 vs. ExPASy Swiss-Prot
Match: CX5C2_HELAN (Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   94 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 258
            M G ++AH  LKGPSVVKE+             WKM+ WN QRK+R FYDLLEKG
Sbjct:    1 MGGGRVAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKG 55          
The following BLAST results are available for this feature:
BLAST of CK936090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CX5C3_ARATH3.691e-1465.45Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
CX5C2_ARATH1.403e-1361.82Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
CX5C1_ARATH1.832e-1361.82Probable cytochrome c oxidase subunit 5C-1 OS=Arab... [more]
COX5C_ORYSJ1.832e-1363.64Cytochrome c oxidase subunit 5C OS=Oryza sativa su... [more]
COX5C_HORVU4.512e-1260.00Cytochrome c oxidase subunit 5C OS=Hordeum vulgare... [more]
CX5C2_HELAN8.510e-1154.55Cytochrome c oxidase subunit 5C-2 OS=Helianthus an... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004387_B01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936090 ID=CK936090; Name=CK936090; organism=Citrus sinensis; type=EST; length=540bp
GGGGACTTCTGTTATTGTGCTCAATCTGACTCGTGCTATTCGCTTAATCG
GTCTCGTCTCCGCCCGGGTTTATAGCATTTAACTAGAAGTGAAATGGCTG
GCCACAAGATTGCTCATGCCACCTTGAAAGGTCCAAGCGTTGTCAAGGAG
ATATGTTTAGGAATTACACTGGGGCTGGCTGCTGGTGGTCTTTGGAAGAT
GAATCAGTGGAATAATCAAAGAAAGTCAAGGGTATTTTATGACTTGCTAG
AGAAAGGTGAAGTTAGCGTTGTTGTAGAAGAATAAAGTGTTTACGTTATC
ACGGTGATGATGTGGATGGCTTCAATGGTACTCTGATAATTTGGATTCTC
CTTATTTGGCGCCTAGATCTCACATGATCTTCCATAGTTTGGGTTTTCAA
CAAATAAATTTTCTTTTCTGAGACTTGACTGATTGTTGGTTATGAAATTG
TAAAGATTCTTGGTTCTCTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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