CK936095

Overview
NameCK936095
Unique NameCK936095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936095_ssr372 microsatellite CK936095_ssr372:372..383. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1817 contig Csv1_Contig1817:15..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936095 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   49 MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            MKL   T+++ +L+++ SL++   AGS FCDSKC  RC +AG+ DRCLKYCGICCE+CKCVPSGTYGNKHECPCYRDK N KGK KCP
Sbjct:    1 MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CK936095 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.337e-14
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  KC  RC +   +  C+ +C  CC  C CVP+GTYGNK  CPCY +   K+G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CK936095 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  +C  RC     +  C+ +C  CC  C CVP G YGNK  CPCY +   ++GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CK936095 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   ++G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CK936095 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 1
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  +C +RC ++     CL+ C  CC  C CVP GT GN H CPCY       G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CK936095 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  +C  RC ++   + CL+ C  CC  C CVP GT GN H CPCY     + G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of CK936095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SNAK1_SOLTU2.590e-3468.18Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC1.337e-1449.15Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC3.292e-1345.76Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH9.578e-1345.76Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA2_ARATH8.108e-1244.07Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH1.059e-1144.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004386_H11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936095 ID=CK936095; Name=CK936095; organism=Citrus sinensis; type=EST; length=494bp
GGGGAATCAATCCTAGTACTAAAGTCACTTGAAAGGAAAGCAGAAAAAAT
GAAGCTTCACTTTACAACTGTTGTTGTTTGCTCTCTTATCCTCAGCTTCT
CTCTCTTGGAGCCTGCCACGGCTGGATCACCCTTTTGTGACAGCAAGTGT
GCGGAAAGGTGCAAGCAAGCAGGAGTGCAGGACCGGTGCTTGAAGTACTG
CGGGATATGCTGTGAGGACTGCAAGTGTGTGCCTTCTGGGACTTACGGAA
ACAAGCATGAGTGCCCTTGCTACAGGGACAAGGTTAACAAGAAGGGGAAG
CCCAAGTGCCCTTGAATTTCGAAACCGCATCAAAATTCAAATGCTCTGCT
TTAATTATGTTCTGTAAACAGTATTATTATTATTGGTAGTATTATATTAT
GATGGTGGTGGAATGTTAATGCACTTATATTATTCTTAAATAATAAAAGC
TATTTCTCTTGGTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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