CK936111

Overview
NameCK936111
Unique NameCK936111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936111 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.300e-23
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   45 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 230
            IDCGG C  RC L SRP LCNRACGTCC RC CVPPGT+GN E C  CY  +TTHGN+ KCP
Sbjct:   44 IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of CK936111 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.076e-21
Identity = 43/62 (69.35%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   45 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 230
            IDCGG CK RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G R KCP
Sbjct:   39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of CK936111 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.295e-20
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 3
Query:   45 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 230
            IDCGG CK RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG R KCP
Sbjct:   39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
BLAST of CK936111 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.295e-20
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   45 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 230
            IDCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R KCP
Sbjct:   38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
The following BLAST results are available for this feature:
BLAST of CK936111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU1.300e-2370.97Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA3_ARATH2.076e-2169.35Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH2.295e-2066.13Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA1_ARATH2.295e-2064.52Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004386_F08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936111 ID=CK936111; Name=CK936111; organism=Citrus sinensis; type=EST; length=400bp
GCCAGCTTGTTGTGAGAGGTGTAACCAGAAGGCTTATGCAAGACATAGAC
TGTGGAGGGTTGTGCAAACAGAGGTGCAGCCTTCACTCAAGGCCAAACTT
GTGTAACAGAGCATGCGGCACGTGTTGTGTAAGATGCAAGTGCGTGCCAC
CTGGCACCGCGGGTAACAGGGAGCTTTGTGGGAGTTGCTATACTGACATG
ACTACCCATGGAAACAGGACTAAGTGCCCATAGGCCCATGGGCTTCTGAC
TCCAGACTGGCCTGAACCCATCTGGGTTGTACATATCTTTTCTCTTGGAA
CTTTTGTAACCTAAGTGCGACTGTTTAAAAGTGGGCTATGGGCTGTCTAA
TAATAATTATAATTTGTGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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