CK936120

Overview
NameCK936120
Unique NameCK936120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.642e-86
Identity = 153/160 (95.62%), Postives = 158/160 (98.75%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 527
            MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.149e-81
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 527
            MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF EGKDLVV+VMS+MGEEQI A+KD+G KN
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTKN 160          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.500e-81
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.342e-81
Identity = 143/159 (89.94%), Postives = 152/159 (95.60%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.342e-81
Identity = 143/159 (89.94%), Postives = 152/159 (95.60%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.701e-81
Identity = 145/160 (90.62%), Postives = 152/160 (95.00%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 527
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF EGKDLVV+VMS+MGEEQI A+KDIG KN
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.725e-81
Identity = 142/159 (89.31%), Postives = 152/159 (95.60%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEHHFESKADAGASKT+PQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.270e-80
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEHHFESKADAGASKT+PQQAGTIRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.166e-80
Identity = 142/159 (89.31%), Postives = 153/159 (96.23%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEHHFE  ADAGASKT+PQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ G+TKDDL+LPTD++LL+QIKDGFA+GKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:    1 MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CK936120 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.829e-80
Identity = 146/159 (91.82%), Postives = 150/159 (94.34%), Query Frame = 3
Query:   48 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 524
            MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTDENLLS IKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
The following BLAST results are available for this feature:
BLAST of CK936120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF5A_MANES2.642e-8695.63Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_SOLLC1.149e-8191.25Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_NICPL1.500e-8191.82Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A1_TOBAC3.342e-8189.94Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL3.342e-8189.94Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A3_SOLTU5.701e-8190.63Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A5_SOLTU9.725e-8189.31Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC1.270e-8089.31Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_MEDSA2.166e-8089.31Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A3_SOLLC2.829e-8091.82Eukaryotic translation initiation factor 5A-3 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004386_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936120 ID=CK936120; Name=CK936120; organism=Citrus sinensis; type=EST; length=803bp
GGGGAGACAGAAGCAGAAGGAGAACAAGAAGAAGAAAGAAAAAAACTATG
TCGGACGAGGAGCACCACTTCGAATCGAAGGCTGATGCCGGTGCATCGAA
GACTTTCCCTCAGCAAGCTGGAACCATCCGCAAGAATGGTTATATTGTCA
TCAAAAATCGTCCTTGCAAGGTTGTTGAAGTTTCCACTTCAAAGACTGGC
AAGCATGGACATGCCAAGTGCCACTTTGTGGGAATTGATATATTTAATGG
AAAGAAGCTTGAAGATATTGTGCCTTCCTCCCACAATTGTGATGCTCCCC
ATGTTACTCGCACTGACTATCAGCTGATTGATATATCCGAAGATGGTTTT
GTGAGCCTTTTAACTGAAACCGGAAACACCAAGGATGATCTGAGGCTTCC
TACCGATGAAAATCTGCTTAGCCAGATTAAAGATGGGTTTGCTGAAGGAA
AAGACCTTGTGGTGACCGTTATGTCGTCAATGGGAGAGGAGCAGATCTGT
GCCCTTAAGGACATTGGTCCTAAGAATTAACTATAATCCCATGGCATTAG
CTTTGGCTGATAGCAGGAGAACTCTTTCTTATGTTGCCAACATGGAGACT
ATCTACTATCCATGTCCACAACAAACTTCCATTAAGATAGTATTTTGGCT
GTGTATTAAAATATCGTCGTGCTTGTGGTAAAGGAAGTGGAAAGAAAGCA
GGTGTCGTCAATCTCCTGTTGAACGAAATTTATGTTGACAGCATCTCGGA
CTTATATATATTTTACTATTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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