CK936136

Overview
NameCK936136
Unique NameCK936136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936136 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.498e-86
Identity = 159/217 (73.27%), Postives = 181/217 (83.41%), Query Frame = 2
Query:  161 MLSSSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 787
            MLS  YSLP          TK+F     ++   ++VVCAARGPRPR PRVWK RKRIGTISK+AK++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+EK+WK+IIQVTKWMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R MH+K+FE+FADMEELGV+PNV+IVSM+G  F KL M
Sbjct:    1 MLSLRYSLPYLLLQTRESSTKLF-----TKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEM 212          
BLAST of CK936136 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.052e-39
Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = 2
Query:  284 VWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 781
            +WK     G+  K+  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L     W R+IQ+ KWMLSKGQG TMGTY +LL A   D R DEAE LW  I   H    PR  F +MI++Y +  +H+K+ E+FADMEEL V P+      +  AF++L
Sbjct:   85 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFREL 250          
The following BLAST results are available for this feature:
BLAST of CK936136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP332_ARATH1.498e-8673.27Pentatricopeptide repeat-containing protein At4g21... [more]
PP322_ARATH1.052e-3947.59Pentatricopeptide repeat-containing protein At4g18... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004386_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936136 ID=CK936136; Name=CK936136; organism=Citrus sinensis; type=EST; length=788bp
CGAAAGGAAGGCAACAAGAAACTTTTCCATCAACTCATTATAATCTCTGC
TCTCCACACAGATAATTTTTTTATTTCTCCAACTCTGCAGCTTATTTTTA
TTCAAGAAATGCGAAATATTTTCATTTGCAAGTGACCAAATAGAGGTTCT
AATTAAGAAGATGCTTAGTTCGAGCTATTCTTTGCCTCCCTTCACGAAAA
TATTTGAACCAATCAAGATTTCCAGAAATGCCAGAAGCCTTGTGGTATGT
GCTGCTAGAGGTCCACGACCTAGATATCCTCGGGTATGGAAAGCAAGAAA
GAGAATTGGGACAATATCCAAGTCAGCCAAGCTTGTTACTTGTATAAAAG
GATTGTCGAATGTTAAAGAAGAAGTTTATGGGGCTCTTGACTCCTTTATT
GCTTGGGAATTAGAGTTTCCATTGATTACAGTAAAGAAAGCATTGAAGAC
TCTTGAAAATGAAAAGGATTGGAAAAGGATAATTCAGGTGACAAAATGGA
TGCTGAGCAAAGGTCAAGGGAGAACAATGGGCACCTATTTTTTGCTACTG
AATGCTTTAGCAGAGGATGGGAGACTTGATGAAGCCGAAGAACTTTGGAC
AAAAATATTTTTGGATCACCTAGAAGGCACCCCACGTATTTTCTTTGATA
AGATGATTTCTATTTACTATAACAGGGGCATGCACGAGAAGATGTTTGAG
ATATTTGCCGATATGGAGGAGCTTGGTGTTAGACCAAATGTTTCAATTGT
TTCAATGATGGGAAACGCCTTCCAAAAGCTAGGTATGT
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