CK936186

Overview
NameCK936186
Unique NameCK936186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:484..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936186 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.668e-20
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   76 RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLQCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 504
            R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L  VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  182 RIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CK936186 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.912e-18
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   79 VFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLQCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 504
            +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L  VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  185 IFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CK936186 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   79 VFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLQCVAGNDLIKDTEMEYYEAMKKAGKDVELL 471
            V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L  VAG DL++D ++ Y + +KK G +V LL
Sbjct:  185 VYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CK936186 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   76 RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLQCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 504
            RVFL GDSSGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L  V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  191 RVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of CK936186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH2.668e-2041.26Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.912e-1838.03Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH9.491e-1838.93Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.675e-1435.66Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004385_F12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936186 ID=CK936186; Name=CK936186; organism=Citrus sinensis; type=EST; length=829bp
GGGCTCCGGTCACTCCCTCTGGCTCAGGCTCAGGCTCGGGAGAATAATTN
GNNNACTGAACATGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCT
CCGGAGGGAACGTAGTGCATGAAGTGGCGGCACGTGCAGGTGACGCGGAC
TTGAGCCCGTTGCGTGTGGCCGGAGCGATTCCGATTCATCCGGGTTTCCT
CCGGCAGGAAAGGAGCAAGTCGGAGTTGGAAAACCCGCAGTCACCTCTTC
TGACTCTGGACATGGTGGACAAGTTCTTGAGCTTTGCCCTGCCGTTGAAC
AGCGACAAGGGGCATCCGTACACCTGTCCAATGGGGCCGGCTGCGTCGCC
GATCGACGGTCTGAAGCTGCCTCCGTTTCTGCAGTGCGTGGCGGGTAATG
ACTTGATTAAGGACACTGAGATGGAATATTATGAAGCCATGAAAAAGGCT
GGAAAGGATGTGGAGTTGTTGGTGAATCCTGGAATGGGTCACAGTTTTTA
TCTCGACAAGATTGCAGTCGATATGGACCCAAACACTGCTGCTCAAACTT
GTAGTCTTTTTCAAGGAATAGCGGAGTTTATGAGGAAGCACTGATCAATT
ATCAATTTTTTAATCCATAAATAGTTGATTATCCGATTAATGGTGGGGTT
TTTCTTAAGTTACATTTGTCGTAACCTAACAACCCAGTTAAAATATACAA
AAATAAGTAACATTGCAAGCGTGTGATTTTTACATTGTTTTAGTTGTGCT
CCAAGTTATTACAATAAATGGAACTTAACAAAACCCTAATGGTGGATCAN
NNAAAAAAAAAAAAAAAAAAAAAAAAAAA
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