CK936205

Overview
NameCK936205
Unique NameCK936205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:3..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.286e-77
Identity = 137/197 (69.54%), Postives = 166/197 (84.26%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LS++G   NF+TL YI  VLL TVP+ Y+KYEDK+D  GEKA +E+KKQYAV DEKVL
Sbjct:   65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVL 261          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.312e-76
Identity = 134/197 (68.02%), Postives = 161/197 (81.73%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            +FKSK++RLFGREKP+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LS++G+  NF+TLFY   VLL T+PV+YEKYEDK+D++GEKA  EIKKQYAV DEKVL
Sbjct:   44 SFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVL 240          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.254e-75
Identity = 139/197 (70.56%), Postives = 162/197 (82.23%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            + K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI  VLL T+PV+YEKYEDK+D FGEKA  EIKKQY  FD KVL
Sbjct:   40 SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVL 236          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.795e-75
Identity = 138/240 (57.50%), Postives = 178/240 (74.17%), Query Frame = 1
Query:   94 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            MAE   +   +++SL+EKI+                       A K+K++R+FGREKP+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EKA  E++KQY VFDEKVL
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVL 240          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.795e-75
Identity = 131/196 (66.84%), Postives = 165/196 (84.18%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKV 807
            + KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LS++G   +F+TL YI  VLL TVP+ Y+KYEDK+DS+GEKA  E+KKQYAV D KV
Sbjct:   61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKV 256          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.415e-72
Identity = 135/240 (56.25%), Postives = 170/240 (70.83%), Query Frame = 1
Query:   94 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            MAE   +    ++SL+EKI                        A K+K++RLFGREKP+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EK   E+KK Y VFDEKVL
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVL 240          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.460e-55
Identity = 102/192 (53.12%), Postives = 140/192 (72.92%), Query Frame = 1
Query:  235 VFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+SV+GNW +F++L YI FVL+HTVP++YEKYED+ID   EKA +E+KK Y VF+ K L
Sbjct:   51 IYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFL 239          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.814e-51
Identity = 93/190 (48.95%), Postives = 132/190 (69.47%), Query Frame = 1
Query:  229 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFD 798
            S+  RLF R+KPIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+ YI FV  HT+PV+YE+YED++D F +   ++    Y   D
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLD 229          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.390e-39
Identity = 79/193 (40.93%), Postives = 115/193 (59.59%), Query Frame = 1
Query:  232 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++S++G + NFV L +I FV + T+PV+YE YED +D+   K   ++KK Y   D  VL
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVL 211          
BLAST of CK936205 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.896e-31
Identity = 68/185 (36.76%), Postives = 106/185 (57.30%), Query Frame = 1
Query:  256 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATVEIKKQYAVFDEKVL 810
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID         I+ QY   DE++L
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLL 186          
The following BLAST results are available for this feature:
BLAST of CK936205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLA_ARATH2.286e-7769.54Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH4.312e-7668.02Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.254e-7570.56Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.795e-7557.50Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH2.795e-7566.84Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH8.415e-7256.25Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.460e-5553.13Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.814e-5148.95Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH9.390e-3940.93Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH1.896e-3136.76Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004385_E04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936205 ID=CK936205; Name=CK936205; organism=Citrus sinensis; type=EST; length=810bp
GGGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATT
TTTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGG
AACATGCACCTGAGCACGAATCATCCGACAAATCACTGGTGGAGAAGATC
ACGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGA
CAAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCG
GAAGAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGAT
ATTTTCCTATGGAGGAACAAGAAAATATCTGCTGGTGTGCTAGGTGGAGC
CACCGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTT
TGGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCC
AATGCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTAC
ACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAA
TCAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCATCTGGAAGGGACTTG
AAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTGTTGTCGG
TAATTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTAC
ACACCGTGCCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTT
GGTGAGAAGGCAACGGTTGAGATCAAGAAGCAATATGCAGTCTTTGATGA
AAAGGTTTTG
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