CK936268

Overview
NameCK936268
Unique NameCK936268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2144 contig Csv1_Contig2144:142..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.541e-17
Identity = 41/62 (66.13%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   10 VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSP 195
            VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT                G KAK   P
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          

HSP 2 Score: 23.8682 bits (50), Expect = 5.541e-17
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  183 TNFPLPSEN 209
            TNFPLPSEN
Sbjct:   80 TNFPLPSEN 88          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.688e-16
Identity = 40/61 (65.57%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   13 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSP 195
            KEVHFRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G+KAK   P
Sbjct:   29 KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          

HSP 2 Score: 22.3274 bits (46), Expect = 2.688e-16
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  183 TNFPLPSENVT 215
            TNFPLP E+ T
Sbjct:   86 TNFPLPGESTT 96          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 41/62 (66.13%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   10 VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSP 195
            VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT                G KAK   P
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   13 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSPCLLKM 210
            KE+ +RGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                GAKAK   P  L++
Sbjct:   21 KEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLEL 86          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 NGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSP 195
            NG VKE+ FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAK   P
Sbjct:   20 NGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 38/66 (57.58%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   13 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSPCLLKM 210
            +EVH+RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                G KAK   P  L +
Sbjct:    8 REVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSL 73          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 38/60 (63.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   19 VHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSPC 198
            V +RGVRKRPWGRYAAEIRDP KKSRVWLGTFDT                GAKAK   PC
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPC 77          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSPCLLKM*PTK 222
            KE+ +RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                G KAK     ++   PT+
Sbjct:   27 KEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQ 96          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 37/64 (57.81%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    4 GIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSP 195
            G VKE  +RGVRKRPWGR+AAEIRDP KKSRVWLGTFD+                G KAK   P
Sbjct:   20 GSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CK936268 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/65 (55.38%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 NGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKLTSP 195
            +G  KE+ FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAK   P
Sbjct:   20 SGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
The following BLAST results are available for this feature:
BLAST of CK936268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ERF4_NICSY5.541e-1766.13Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF80_ARATH2.688e-1665.57Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC3.784e-1666.13Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF78_ARATH1.438e-1559.09Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF82_ARATH2.076e-1458.46Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF81_ARATH2.712e-1457.58Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH3.542e-1463.33Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF79_ARATH2.998e-1352.86Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF83_ARATH6.679e-1357.81Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF3_TOBAC6.679e-1355.38Ethylene-responsive transcription factor 3 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_G09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936268 ID=CK936268; Name=CK936268; organism=Citrus sinensis; type=EST; length=688bp
AACGGTATTGTTAAAGAGGTGCATTTTAGGGGCGTTAGAAAGAGGCCGTG
GGGTCGATATGCAGCCGAGATTAGGGATCCCGGCAAGAAGAGCCGTGTTT
GGCTTGGAACCTTCGACACCGCTGAAGAAGCCGCTCGGGCCTACGACGCT
GCCGCTAGAGAATTTCGCGGCGCCAAGGCTAAACTAACTTCCCCTTGCCT
TCTGAAAATGTAACCAACAAAATTAGTCACAACAATATCAACATCAACAA
TAATAACCAGAGCCCCAGCCAAAGTAGTACCATAGAGTCTTCAAGCCGCG
AGCCGGCTCTGATGATCGATTCGTCGCCGTTAGATCTCAATCTTGGTCCG
GCTTGCGCCGGCGGTGGTGCCGGTGGAGGATTTAACGCCACCGTTCGGTT
TCCCTTCCAGCCTGTGGGGGGTGCTTTCGGTGCGGCGAACCAGGTGTTTT
ATTTTGATCCGGTAGCTGCGATGAAGAGTCAGCAGTATCAACGGCTCAGA
TTCGACCATCACCGGAATTATAATTTTCATGCGGCGGCGGTGACGGCGGT
CGGTGACGGAAGTGTGCAGAGCGACTCTGATTCATCATCCATTGTCGATT
TGAACCATCACGATGATAAGCCACGCAGAGTTCTTGATATTGATCTTAAT
CTTCCACCGGAAGATTTCGCCTGACACTTTTGCCGATG
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