CK936273

Overview
NameCK936273
Unique NameCK936273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6871 contig Csv1_Contig6871:74..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.402e-14
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 259
            ++E++I LC           F+E+ Y ELK  NP LPILIRE S ++P+LWARY  G EK + L+  +  Q+T+ALE+++K
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.402e-14
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 259
            ++E++I LC           F+E+ Y ELK  NP LPILIRE S ++P+LWARY  G EK + L+  +  Q+T+ALE+++K
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVKA 262
            ++E++I LC           F+E+ Y ELK  NP LPILIRE S ++P+LWARY  G EK + L+  +  Q+T+ALE+++ +
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVLSS 97          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 256
            ++E++I LC           F+E+ Y ELK  NP LPILIRE S ++P+LWARY  G EK + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 256
            ++E++I LC           F+E+ Y ELK  NP LPILIRE S ++P+LWARY  G E  + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 256
            ++E++I LC           F+E+ Y ELK  N  LPILIRE S ++P+LWARY  G E  + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 MKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 256
            ++E+++ LC           F+ + Y ELK  +P LPILIRE S ++P+LWARY  G EK + L+ L+  ++T+A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of CK936273 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 2
Query:    8 SRSMKELKILLCHXXXXXXXXXXFVERNYKELKTLNPKLPILIRERSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 259
            ++ +KE++ L C           F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LVK
Sbjct:    8 NKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of CK936273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_PONPY2.402e-1444.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB2.402e-1444.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_BOVIN4.097e-1442.68NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA9.127e-1443.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN4.530e-1342.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO3.835e-1241.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE1.116e-1137.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR5.537e-1138.10NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004384_E07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936273 ID=CK936273; Name=CK936273; organism=Citrus sinensis; type=EST; length=503bp
ACAATTATCTCGGAGCATGAAGGAACTGAAGATCTTACTCTGCCACACTT
CTCCTTCAAGCTCCTCCACTAGATCCTTTGTAGAGAGGAACTACAAGGAG
TTGAAGACTTTAAACCCCAAACTTCCTATCTTGATTCGTGAGCGCAGTGG
GATTGAGCCCCAGTTATGGGCTAGATATGATATGGGTGTTGAGAAGGGCA
TTGGTTTGGATGGTCTGAATGAGGCACAGATCACAAAGGCACTCGAAGAC
CTTGTCAAAGCTGGGGAAGCCCTTAAGCGTTGATATTGCTACTCTTTGAT
CCATATGAGATGAAATAAATGTGTTAGAAAAATCTTGATATGACCAGTTT
GCTCTTTTGTTTAGCAATCATTTTGATGTACTTTGCATGGTTGTCCAATA
TCTTGATTATTGTCTGCATTAGCATATTATACTCTCATCCATATCTTTCA
GCTCAATTAGTGCTAATGTAATACCAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
back to top