CK936275

Overview
NameCK936275
Unique NameCK936275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:227..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.566e-68
Identity = 122/132 (92.42%), Postives = 130/132 (98.48%), Query Frame = 2
Query:  143 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KETIR+NLS+LLGADP+VVNLK
Sbjct:   73 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLK 204          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.376e-68
Identity = 128/170 (75.29%), Postives = 141/170 (82.94%), Query Frame = 2
Query:   29 LRTTQSTSLPRIXXXAAAISSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            L T QS +L  +   AA+ +++E               L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQRPK+SP+KE IR NL +LLGADP VVNLK
Sbjct:   42 LSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKI--LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGADPCVVNLK 209          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.218e-37
Identity = 67/132 (50.76%), Postives = 95/132 (71.97%), Query Frame = 2
Query:  143 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + P++ P+++ +   ++ELL   P  +++K
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAMGQRIAELLATSPDAISVK 355          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_ACIBL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidobacteria bacterium (strain Ellin345) GN=ispF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.382e-36
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            RVG GFD H    G PL IGG+ +PH  G   HSDGDVLLH + DA+LGA+   DIG  FP SDPKWKGA S VFI+EA+R ++ AGY +GN+D +L+L  PK+ P+ + I+ ++++LL  +PT V +K
Sbjct:    3 RVGLGFDSHEFREGIPLRIGGLTIPHTHGLSGHSDGDVLLHAITDALLGAVAAGDIGAFFPPSDPKWKGANSVVFIEEAMRHIETAGYRVGNVDCSLVLNAPKIGPHAKAIQESVAKLLKIEPTAVGIK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.678e-35
Identity = 67/130 (51.54%), Postives = 96/130 (73.85%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ QRPK++PY E ++  ++ELL A+P+ VN+K
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVNVK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.739e-35
Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+P+   +  NL+E LG   T  N+K
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLGLPVTRCNVK 135          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sulfurreducens GN=ispF PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.088e-34
Identity = 66/129 (51.16%), Postives = 93/129 (72.09%), Query Frame = 2
Query:  152 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            R+GHG+D+HRL  G  LI+GG+++PHE G   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L    G+ +GNLDAT++ QRPK++P+   +R +++  L ADP  VN+K
Sbjct:    2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHFPDTDPRYKGADSRALLRHVMELATRKGFHLGNLDATIVAQRPKMAPHIPLMREHIAADLMADPDRVNVK 130          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_BACWK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.134e-34
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+K
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_BACHK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=ispF PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.134e-34
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+K
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVK 131          
BLAST of CK936275 vs. ExPASy Swiss-Prot
Match: ISPF_BACCZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=ispF PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.134e-34
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  149 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLK 538
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+K
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVK 131          
The following BLAST results are available for this feature:
BLAST of CK936275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ARATH2.566e-6892.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CATRO4.376e-6875.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH5.218e-3750.76Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_ACIBL3.382e-3652.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC1.678e-3551.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALME3.739e-3554.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSL1.088e-3451.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACWK4.134e-3450.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACHK4.134e-3450.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCZ4.134e-3450.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_E12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936275 ID=CK936275; Name=CK936275; organism=Citrus sinensis; type=EST; length=539bp
CCGCGTCCCCAATTTCGAAAAAAAACATCTCCGCACAACACAGTCAACGT
CGCTGCCTCGTATTTNNNNNNCAGCTGCAGCCATTTCTTCCATCGAAGTT
AAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTT
TCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTC
TGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCAC
TCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGC
ATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGT
GGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATG
GATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCA
AAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTG
AACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAG
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