CK936278

Overview
NameCK936278
Unique NameCK936278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1852 contig Csv1_Contig1852:43..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.764e-65
Identity = 117/175 (66.86%), Postives = 137/175 (78.29%), Query Frame = 2
Query:  122 DVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            D+ E+TH+VY DV+I+ +  GR+VIGL+G+ VPKT ENFRALCTGEKG G SGKPLHYKG  FHRI+  F+IQGGD   G+G G +SIYG  F DENFK+KH+  GV+SM NSG D+NGSQFFITTV  SWLDG HVVFGKV+QGMD VY IE   G  SG P+ KV IADSGE+
Sbjct:   26 DLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIE-AEGKQSGTPKSKVVIADSGEL 199          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.183e-61
Identity = 110/172 (63.95%), Postives = 132/172 (76.74%), Query Frame = 2
Query:  131 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            EITH+VY DV+I+ +  GRIV+GL+G+ VPKTVENFRALCTGEKG G +GK LHYKG  FHRI+  F++QGGD   G+G G +SIYG  F DENFK+KH+  G +SM N+G D+NGSQFFITTV  SWLDG HVVFGKV+ GMD VY +E   G  SG P+ KV I DSGE+
Sbjct:   32 EITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVE-AEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.494e-60
Identity = 109/172 (63.37%), Postives = 133/172 (77.33%), Query Frame = 2
Query:  131 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            +IT++V+ D++I+ +  GRIV GLYG+ VPKTVENFRALCTGEKG G SGKPLHYK   FHRI+  F+IQGGD  RGDG G +SIYG  F DENFKIKHS  G++SM N+GP++NGSQFFITTV  SWLDG H VFG+VI+GMD V  +E   G+ SG P K   I++SGE+
Sbjct:   27 KITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLE-SIGSQSGTPSKIAKISNSGEL 197          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.146e-56
Identity = 101/168 (60.12%), Postives = 129/168 (76.79%), Query Frame = 2
Query:  143 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            RV+ D+ I  +  GRIV+ LY  +VPKT ENFRALCTGEKG G SGKPLH+KG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+  GV+SM N+GP++NGSQFF+ TVK +WLDG+HVVFG+V++G+D V  +EG  G+ SG P+ +  IAD G++
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGN-GSSSGTPKSECLIADCGQL 171          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.162e-55
Identity = 101/168 (60.12%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  143 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            +V+ D+ I  +  GRIV+ LY  VVPKT  NFRALCTGE G G SGKPLH+KG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+  GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGKP K   IAD G++
Sbjct:    5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.073e-54
Identity = 103/172 (59.88%), Postives = 125/172 (72.67%), Query Frame = 2
Query:  131 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            EITH+VY D+   E+ LG+IV+GLYG VVPKTVENFRALCTGE G G       YKG  FHR++  F+IQGGD  RGDG G +SIYG  FPDENF++KH+    +SM N+G D+NGSQFFITTV  SWLDG+HVVFG+V++G D V AIE         P+  +TIAD+GEI
Sbjct:   29 EITHKVYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKG-------YKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.643e-53
Identity = 96/168 (57.14%), Postives = 124/168 (73.81%), Query Frame = 2
Query:  143 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            +VY D+ I+ Q  GRIV+ LY    P+T ENFRALCTGEKG G +GKPLH+KG  FHR++  F+ QGGD   G+G G +SIYG  F DENF+ KH+  G++SM N+G ++NGSQFFI TVK  WLDG+HVVFG+V++G+D V AIE   G+ SGKP K V +AD G++
Sbjct:    5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIE-KVGSSSGKPTKPVVVADCGQL 171          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.507e-53
Identity = 96/168 (57.14%), Postives = 122/168 (72.62%), Query Frame = 2
Query:  143 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            RV+ D+ +  Q  GRIV+ L+    P+T ENFRALCTGEKGTG SGKPLHYK   FHR++ GF+ QGGD   G+G G +SIYG  F DENF  KH+  G++SM N+GP++NGSQFFI T K  WLDG+HVVFG+V++GMD V AIE   G+ SG+  KKV + D G++
Sbjct:    5 RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTAKKVVVEDCGQL 171          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.689e-53
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 2
Query:  143 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            +V+ D+ I     G+IV+ LY    PKT ENFRALCTGEKG G SGKPLH+KG  FHR++  F+ QGGD  +G+G G +SIYG  F DENF+ KH+  G++SM N+G ++NGSQFFI TVK  WLDG+HVVFG+V++G+D V AIE   G+ SGKP K V IAD GEI
Sbjct:    6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIE-KIGSSSGKPTKPVVIADCGEI 172          
BLAST of CK936278 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.713e-52
Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  131 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHYKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 646
            ++T++VY D+   ++ LGRIV+GLYG+VVPKTVENFRAL TGEKG G       YK   FHR++  F+IQGGD  RGDG G  SIYG  F DENFK++H+  G++SM N+G D+NGSQFFITTV  SWLDG HVVFGKVI+GMD V AIE        +P   V IAD GE+
Sbjct:   27 KVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
The following BLAST results are available for this feature:
BLAST of CK936278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
CP19D_ARATH1.764e-6566.86Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CP20A_ARATH1.183e-6163.95Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIB_DICDI6.494e-6063.37Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP7_CAEEL1.146e-5660.12Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP3_CAEEL2.162e-5560.12Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIB_YARLI1.073e-5459.88Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
CP18C_ARATH2.643e-5357.14Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_CATRO4.507e-5357.14Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CP19B_ARATH7.689e-5358.33Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
PPIB_ORPSP1.713e-5258.72Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_C06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936278 ID=CK936278; Name=CK936278; organism=Citrus sinensis; type=EST; length=647bp
AACGGTGCGTAGAGAGATCTCGGGCTTCGTTCGGACGCGATATCTTCTAC
TTTTTGTTCTCATCTTTGTCTTTCTCATTGCCGCTTTCAGTAGTCGCAGA
AAGGAAGAAGAGAAGGAGGAAGATGTGTTTGAAATTACACATAGAGTATA
CTTGGATGTTGATATAGAAGAGCAACGTTTAGGTAGAATTGTTATTGGAT
TGTATGGCCAAGTTGTACCAAAAACTGTTGAAAATTTCAGGGCTTTATGC
ACAGGAGAAAAAGGCACTGGGGCAAGTGGGAAACCTCTGCACTATAAGGG
AAAACCATTCCATCGTATTGTATCTGGGTTTGTGATTCAAGGTGGAGATA
TAGTCCGTGGTGATGGCAAGGGAAGTGACTCTATATATGGTGGCACTTTT
CCTGATGAGAACTTTAAGATTAAACACTCACATGCAGGTGTTGTTTCCAT
GGTGAATTCAGGACCTGATTCCAATGGCTCTCAATTCTTCATCACCACTG
TCAAGGCCAGTTGGTTGGATGGGGAGCATGTCGTCTTCGGGAAGGTTATT
CAAGGCATGGACACTGTGTATGCTATTGAAGGTGGAGCTGGAACTTACAG
TGGAAAACCAAGAAAGAAAGTCACTATTGCTGACTCAGGAGAGATAC
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