CF420816

Overview
NameCF420816
Unique NameCF420816
TypeEST
OrganismCitrus trifoliata ()
Sequence length367
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.898e-52
Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            +KPVRELV DDAWLNGEFITTVQQRGAAIIKARK           CDHI DWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA EL +EK LAY
Sbjct:  207 DKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEKTLAY 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.091e-52
Identity = 98/122 (80.33%), Postives = 106/122 (86.89%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            EKPVR+LV DDAWLNGEFI+TVQQRGAAIIKARK           CDHIRDWVLGTP+GT+VSMGVYSDGSYNVP+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTA EL++EK LA+
Sbjct:  207 EKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLAH 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.649e-52
Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            EKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK           CDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTA EL +EK LAY
Sbjct:  207 EKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEKDLAY 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.481e-51
Identity = 97/122 (79.51%), Postives = 106/122 (86.89%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            EKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTA EL +EK LAY
Sbjct:  207 EKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEKDLAY 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.629e-51
Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            EK VRELV DDAWLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  EL +EKALAY
Sbjct:  207 EKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKALAY 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 96/122 (78.69%), Postives = 101/122 (82.79%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            EKPVRELV DD WLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY VP+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA EL++EK LAY
Sbjct:  207 EKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAY 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 1.638e-50
Identity = 97/122 (79.51%), Postives = 101/122 (82.79%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            EKPVRELV DD WLN EFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY VPAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA ELS+EK LAY
Sbjct:  207 EKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEKTLAY 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 146.747 bits (369), Expect = 3.315e-35
Identity = 74/123 (60.16%), Postives = 90/123 (73.17%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            E  V E VKDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY VP  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA EL++EK  A+
Sbjct:  206 EVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAF 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            E  V + +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG+ Y VP  L+YSFPVT +N  W +V+GL+I++FSR+K+DLTA EL++EK  A+
Sbjct:  206 EVGVYDALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEKETAF 328          
BLAST of CF420816 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 71/123 (57.72%), Postives = 90/123 (73.17%), Query Frame = 2
Query:    2 EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAXELSQEKALAY 367
            E  V E +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY +P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA EL++EK  A+
Sbjct:  206 EVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEKETAF 328          
The following BLAST results are available for this feature:
BLAST of CF420816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDHC_MESCR3.898e-5279.51Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_MEDSA5.091e-5280.33Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH6.649e-5280.33Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC1_ARATH1.481e-5179.51Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_BETVU5.629e-5178.69Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_MAIZE1.254e-5078.69Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_ORYSJ1.638e-5079.51Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_PIG3.315e-3560.16Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_FELCA7.386e-3557.72Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_BOVIN1.260e-3457.72Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_118000-819 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-9T3_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF420816 ID=CF420816; Name=CF420816; organism=Citrus trifoliata; type=EST; length=367bp
GGAAAAGCCTGTCCGTGAGCTTGTCAAGGATGATGCATGGTTGAATGGAG
AATTCATAACCACAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGA
AAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCG
TGATTGGGTTCTTGGAACTCCTGAGGGCACTTGGGTCTCCATGGGGGTAT
ACTCTGATGGTTCATACAATGTACCAGCTGGGCTCATTTACTCATTCCCA
GTAACCTGCCGCAACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGA
TGAATTCTCAAGGAAGAAGTTGGACTTGACAGCANAGGAGCTCTCCCAGG
AGAAAGCCCTCGCATAC
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