CF420863

Overview
NameCF420863
Unique NameCF420863
TypeEST
OrganismCitrus trifoliata ()
Sequence length355
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EI3EB_DANRE (Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio GN=eif3eb PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 39/71 (54.93%), Postives = 59/71 (83.10%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDM 313
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL++TNMVD+AMD++K+LY  +++P  +
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSETNMVDFAMDVYKNLYPDKEIPHSL 71          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_SALSA (Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.855e-17
Identity = 38/68 (55.88%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL++TNMVD+AMD+HK+L+  +++P
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSETNMVDFAMDVHKNLFPEKEIP 68          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_RAT (Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus GN=Eif3e PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 40/68 (58.82%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIP 67          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_PONAB (Eukaryotic translation initiation factor 3 subunit E OS=Pongo abelii GN=EIF3E PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 40/68 (58.82%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIP 67          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_MOUSE (Eukaryotic translation initiation factor 3 subunit E OS=Mus musculus GN=Eif3e PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 40/68 (58.82%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIP 67          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_MACFA (Eukaryotic translation initiation factor 3 subunit E OS=Macaca fascicularis GN=EIF3E PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 40/68 (58.82%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIP 67          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_HUMAN (Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 40/68 (58.82%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIP 67          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_BOVIN (Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 40/68 (58.82%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIP 67          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVP 304
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL+ TNMVD+AMD++K+LY  +++P
Sbjct:    1 MADYDLTTKIAQFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSDTNMVDFAMDVYKNLYADKEIP 68          
BLAST of CF420863 vs. ExPASy Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.398e-17
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  101 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDM 313
            MA +DLT ++   LDRHLVFPLLEFL  +++Y + ++LK K++LL+ TNMVD+AMD++K LY  E+VP  +
Sbjct:    1 MAEHDLTSKMGCFLDRHLVFPLLEFLSVKEIYDEHELLKGKLDLLSNTNMVDFAMDVYKGLYPDEEVPTSL 71          
The following BLAST results are available for this feature:
BLAST of CF420863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EI3EB_DANRE4.883e-1854.93Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SALSA1.855e-1755.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_RAT3.165e-1758.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PONAB3.165e-1758.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MOUSE3.165e-1758.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MACFA3.165e-1758.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_HUMAN3.165e-1758.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOVIN3.165e-1758.82Eukaryotic translation initiation factor 3 subunit... [more]
EI3EA_XENLA4.133e-1755.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_NEMVE5.398e-1753.52Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_118000-866 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-16_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF420863 ID=CF420863; Name=CF420863; organism=Citrus trifoliata; type=EST; length=355bp
CTAAAAACCCAACGCTCGTCTAGTTTGCTCTTGGTCTACAGAAGAACAGC
AGCAGCAGCAGACGCCGCTGCAGCCGAGGAACAAAATTTCAACGCCGACA
ATGGCGACGTACGATTTGACGCAGAGAATCGCGCCGAACCTGGACAGGCA
TCTGGTGTTTCCGCTGCTGGAGTTTCTCCAAGAGCGGCAGATGTACCCGG
ACGAGCAGATTCTGAAATCGAAGATAGAGCTCTTGAACAAGACGAACATG
GTCGACTACGCGATGGACATCCACAAGAGCCTCTACCACACCGAAGACGT
CCCGCAGGATATGGTCGAGCGGAGGGTCGAGGTCGTTCTCGTTTGAAGGC
CCTGG
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