CF420877

Overview
NameCF420877
Unique NameCF420877
TypeEST
OrganismCitrus trifoliata ()
Sequence length350
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.908e-26
Identity = 64/101 (63.37%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGLSFTKLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.908e-26
Identity = 64/101 (63.37%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGLSFTKLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.908e-26
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*DYYPVQALSSER-SSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGLSFTKLFSRLFAKKEMRILMVGLDAA       Q    E  ++ P +  ++    +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNV--ETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.093e-25
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGL+FTKLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.865e-25
Identity = 63/101 (62.38%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGLSF KLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.181e-25
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGL+FTKLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDR+
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.181e-25
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGL+FTKLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDR+
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.181e-25
Identity = 63/101 (62.38%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGLSF KLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.426e-25
Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRDPCGRS 339
            MGLSFTKL  RLF+KKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD  G +
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEA 103          
BLAST of CF420877 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.579e-24
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   28 MGLSFTKLFSRLFAKKEMRILMVGLDAAW*D--YYPVQALSSERSSPPFLPLDLTWRPLNIRTSAFTVWDVRGQDKIRPLWRHYFQNTQGLIFVXDSNDRD 324
            MGL+ +KLFSRLFAKKEMRILMVGLDAA      Y ++      + P    +      +  +  +FTVWDV GQDKIRPLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98          
The following BLAST results are available for this feature:
BLAST of CF420877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ARF_VIGUN4.908e-2663.37ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA4.908e-2663.37ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_CATRO4.908e-2665.00ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE1.093e-2562.38ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH1.865e-2562.38ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF2_ORYSJ3.181e-2561.39ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ3.181e-2561.39ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH3.181e-2562.38ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_SALBA5.426e-2558.49ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_SOLTU1.579e-2460.40ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_118000-880 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-4T3_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF420877 ID=CF420877; Name=CF420877; organism=Citrus trifoliata; type=EST; length=350bp
GGTTGGTCTCGCTTAATTTTGTGAAAAATGGGGCTGTCTTTCACCAAGCT
TTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCTCATGGTAGGTC
TCGATGCAGCCTGGTAAGACTACTATCCTGTACAAGCCTTAAGCTCGGAG
AGATCGTCACCACCATTCCTACCATTGGATTTAACGTGGAGACCGTTGAA
TATAAGAACATCAGCCTTTACTGTCTGGGATGTCCGGGGTCAAGACAAGA
TCCGACCTTTGTGGAGACATTATTTCCAAAACACCCAAGGACTCATCTTT
GTGGNTGACAGTAATGATCGCGATCCGTGTGGTAGAAGCTAGGGATGAGT
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