CF421323

Overview
NameCF421323
Unique NameCF421323
TypeEST
OrganismCitrus trifoliata ()
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF421323 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 2 
Query:  257 YYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSF 463
            Y A PSQSY     ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLIVGIDFTKSNEWTGARSF
Sbjct:   76 YSAPPSQSYGS---DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSF 141
[Close]
BLAST of CF421323 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:  257 YYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSF 463
            Y   PSQS         +K +R+YSKI DNY SL QV++AL RAGLESSNLIVGIDFTKSNEWTGA+SF
Sbjct:  111 YPPPPSQSQVA----DRKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSF 175
The following BLAST results are available for this feature:
BLAST of CF421323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH3.269e-2276.81E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.857e-1766.67E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_118000-332 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-2T3_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF421323 ID=CF421323; Name=CF421323; organism=Citrus trifoliata; type=EST; length=464bp
GGAATTCTGAACTGACGACACCAACTTCACCGACATCTTCTTCTTAAGCC
AAGCATAAGAATTGAAGATGTTGCTGAAACTGAACAGTTTTTACTAAGAA
TATCTGTTGGTTATAGAGTTGATGGGTGGGATAATTTCAAAACGGGAAAG
TTCTCGGCAGCCTTCATTTGGGTCTAGTTCATATTCATGGAATCATCACA
ATTATCCGCAGCAGCCACCATATGGTCAACCAAGTCAAGAGTATGCCCCA
CAACAGTATTATGCCACTCCATCTCAAAGCTACAGTGGTCGGGCCCCAGA
GTCGACGAGGAAGTTGGAGAGGAAGTACTCCAAGATAGATGATAACTATC
ATAGCCTGGAGCAGGTTACAGATGCTTTGGCACGTGCTGGGCTAGAGTCA
TCAAATCTCATTGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACAGG
TGCAAGATCATTTC
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