CF421325
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 6.337e-42 Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 3 Query: 3 MAPKQPNTGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 332 M Q TGLFVGLN+GH+VT++EL PRP RKGKTSKR F+RN+I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG EKKK Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 4.107e-41 Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 3 Query: 24 TGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 332 TGLFVGLN+GH+VTK+E PPRP +RKGKTSKR F+RN+I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G EKKK Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.321e-39 Identity = 82/105 (78.10%), Postives = 91/105 (86.67%), Query Frame = 3 Query: 24 TGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 329 TGLFVGLN+GH+VT++EL PRP RKGKTSKR F+R +IREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG EKK Sbjct: 8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 3.046e-36 Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 3 Query: 3 MAPKQPNTGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 275 MAPKQPNTGLFVGLN+GHIVTKKEL PRP+DRKGKTSKR HFVRN+IREVAGF PYEKRITELLKVGKDKRALKV + K+G H + K+ E Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30 Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 3 Query: 36 VGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 323 VGLN+GH VTKK PRP+ RKG S+RV VR V+REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+ LRK +A GE Sbjct: 6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 2.858e-26 Identity = 54/93 (58.06%), Postives = 77/93 (82.80%), Query Frame = 3 Query: 27 GLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305 GL VGLN+G ++TK++LP RP+ RKG+ SKR FVR+++REVAGFAPYE+R+ EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ SR Sbjct: 4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26 Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 3 Query: 30 LFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 329 L VGL +GH VTK E PRP+ RKG SK FVR++IREV GFAP+E+R ELLKV KDKRALK K++LGTH R K+KR+E+SN L R ++K Sbjct: 7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25 Identity = 54/93 (58.06%), Postives = 75/93 (80.65%), Query Frame = 3 Query: 27 GLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305 GL VGLN+G +TK++LP RP+ RKG SKR FVR+++REVAGFAPYE+R+ EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ SR Sbjct: 4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25 Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 3 Query: 36 VGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305 VGLN+GH VTK PR R+G+ +K FVR++IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+KREE+SN L R Sbjct: 9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25 Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 3 Query: 36 VGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305 VGLN+GH VTK PR R+G+ +K FVR++IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+KREE+SN L R Sbjct: 9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98 The following BLAST results are available for this feature:
BLAST of CF421325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CF421325 ID=CF421325; Name=CF421325; organism=Citrus trifoliata; type=EST; length=464bpback to top |