CF421325

Overview
NameCF421325
Unique NameCF421325
TypeEST
OrganismCitrus trifoliata ()
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.337e-42
Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 3
Query:    3 MAPKQPNTGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 332
            M   Q  TGLFVGLN+GH+VT++EL PRP  RKGKTSKR  F+RN+I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG  EKKK
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.107e-41
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 3
Query:   24 TGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 332
            TGLFVGLN+GH+VTK+E PPRP +RKGKTSKR  F+RN+I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G  EKKK
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.321e-39
Identity = 82/105 (78.10%), Postives = 91/105 (86.67%), Query Frame = 3
Query:   24 TGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 329
            TGLFVGLN+GH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG    EKK
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.046e-36
Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 MAPKQPNTGLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 275
            MAPKQPNTGLFVGLN+GHIVTKKEL PRP+DRKGKTSKR HFVRN+IREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 3
Query:   36 VGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 323
            VGLN+GH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRK +A   GE
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.858e-26
Identity = 54/93 (58.06%), Postives = 77/93 (82.80%), Query Frame = 3
Query:   27 GLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305
            GL VGLN+G ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   30 LFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 329
            L VGL +GH VTK E  PRP+ RKG  SK   FVR++IREV GFAP+E+R  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R     ++K
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25
Identity = 54/93 (58.06%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   27 GLFVGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305
            GL VGLN+G  +TK++LP RP+ RKG  SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   36 VGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305
            VGLN+GH VTK    PR   R+G+ +K   FVR++IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CF421325 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   36 VGLNRGHIVTKKELPPRPADRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 305
            VGLN+GH VTK    PR   R+G+ +K   FVR++IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of CF421325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH6.337e-4276.7960S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH4.107e-4180.0060S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH1.321e-3978.1060S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_DAUCA3.046e-3681.3260S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36_ENTCP7.267e-3068.7560S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36A_SCHPO2.858e-2658.0660S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_IXOSC4.874e-2658.0060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36B_SCHPO1.852e-2558.0660S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_XENTR9.193e-2561.1160S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA9.193e-2561.1160S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_118000-334 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-36_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF421325 ID=CF421325; Name=CF421325; organism=Citrus trifoliata; type=EST; length=464bp
TGATGGCTCCGAAACAGCCAAATACTGGTCTCTTTGTTGGATTAAACAGG
GGTCATATTGTGACCAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCAA
AGGGAAAACAAGCAAAAGGGTCCACTTTGTGAGGAATGTGATTAGGGAAG
TTGCTGGCTTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGTC
GGCAAGGACAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACTCA
CAAGAGGGCAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAGA
GTAGGGCCCCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCTA
GATGTCTTGTTCACCTGAATTTGGGTTATTAAATTTAGCACAGNGNTTTA
GCCTATGTTGNTTGCCTTTTTTTCCCCCTTCANNTAAAAAACTGAGTTAA
AGATGACAATNNGA
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