CF421339

Overview
NameCF421339
Unique NameCF421339
TypeEST
OrganismCitrus trifoliata ()
Sequence length462
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: FA18_ARATH (Uncharacterized FAM18-like protein At1g09330 OS=Arabidopsis thaliana GN=At1g09330 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.277e-44
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 3
Query:  129 RHAFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFECLDHESMARMNXKDSWLXXGTLYLSAVLGXXLGYF 452
            R   FHVLFKGAALAFYILSALFF+SFVIIFVVTVLLAALDFWVVKNVSGRIL GLRWWNEIND+GESVWKFE LD ES+ARMN KDSWL   TLYL+A     LG F
Sbjct:   18 RTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGVF 125          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: FA18_DROME (Uncharacterized FAM18-like protein CG5021 OS=Drosophila melanogaster GN=CG5021 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  138 FFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFECLDHES-MARMNXKDS---WL-------XXGTLYLSAVLGXXLGYFL 455
            FFH+ F+GAA+  Y+    F DSF+  FV  VL  + DFW VKN+SGR+L GLRWWN ++D G S W FE  + ES  +R+N  +    WL         G  +L A+ G    + L
Sbjct:   42 FFHLFFRGAAILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLL 158          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: TVP23_YARLI (Golgi apparatus membrane protein TVP23 OS=Yarrowia lipolytica GN=TVP23 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  141 FHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFECLDHESMARMNXKDSWLXXGTLYLSAVL 431
            F + F+  AL  Y+   LF D FV++FV+ VLL A DFW VKN++GR++ GLRWWNE ++ GESVW FE  D +    +N  DS +    LY + VL
Sbjct:   18 FFLAFRLGALFTYMFGLLFTDKFVLMFVLVVLLLAADFWNVKNIAGRLMVGLRWWNEASETGESVWVFETADPQRY--INPIDSKVFWMMLYGAPVL 112          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: YC2L_CAEEL (Uncharacterized FAM18-like protein C34D4.4 OS=Caenorhabditis elegans GN=C34D4.4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  144 HVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFE-CLDHESMARMNXKDSWL 398
            H+ FKGAAL FY  +  F +SF++ F+V + L ++DFW VKN++GR+L GLRWWN ++  G + WKFE   D    A ++ +  WL
Sbjct:   79 HLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWL 164          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: FA18A_DICDI (Uncharacterized FAM18-like protein 1 OS=Dictyostelium discoideum GN=DDB_G0276319 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.538e-16
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   75 DSRNGSQSASW*KLCRTQRH---AFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFECLDHES 365
            D+ N  Q++         +H    FFH+ FK  A+A +ILS+     FV+ F++  L +A DFWV KNV+GR L GLRWWN+I + G + W FE +  +S
Sbjct:   14 DNNNNGQNSESQPQSNAPKHPISVFFHLFFKIVAVAIFILSSFVNIGFVLTFIIVTLSSAFDFWVTKNVTGRKLVGLRWWNQIKEDGTNNWVFESVQDKS 113          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: FA18B_BOVIN (Protein FAM18B OS=Bos taurus GN=FAM18B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  135 AFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFE 347
            +FFH+ F+ +A+  Y+L  LF  SF+   V  +LL + DFW VKNV+GR++ GLRWWN I++ G+S W FE
Sbjct:   37 SFFHLFFRVSAIIVYLLCELFSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFE 107          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: TVP23_LACBS (Golgi apparatus membrane protein TVP23 OS=Laccaria bicolor (strain S238N-H82) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.634e-16
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  138 FFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFECLDHESMARMNXKDSWLXXGTLYLSAVL 431
            FF  LF+ AA+A YIL   F D++V+  V  V+L A+DFW  +NVSGR L GLR+WN++++ GES W FE  D    A  N  DS +    LY+  +L
Sbjct:   92 FFLYLFRIAAIAVYILCGWFTDNYVLSTVAVVVLLAMDFWNCRNVSGRTLVGLRFWNQVDEDGESYWVFESRDPSRPA--NPIDSKMFWIALYVFPLL 187          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: FA18B_MOUSE (Protein FAM18B OS=Mus musculus GN=Fam18b PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.634e-16
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  135 AFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFEC-----LDHESMARMNXKDSWL 398
            +FFH+ F+ +A+  Y+L  L   SF+   V  +LL + DFW VKNV+GR++ GLRWWN I++ G+S W FE       D+++++    +  WL
Sbjct:   37 SFFHLFFRVSAVVVYLLCELLSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKSTPQDNKTISEAESRIFWL 129          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: FA18A_HUMAN (Protein FAM18A OS=Homo sapiens GN=FAM18A PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 7.634e-16
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  138 FFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFE 347
            FFH+ F+ +A+  Y+    F  SFV  FV+ +LL +LDFW VKNV+GR+L GLRWWN+I++ G+S W FE
Sbjct:   36 FFHLFFRVSAIVTYVSCDWFSKSFVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFE 105          
BLAST of CF421339 vs. ExPASy Swiss-Prot
Match: TVP23_SCHPO (Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe GN=tvp23 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  138 FFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILXGLRWWNEINDMGESVWKFECLDHESMARMNXKDSWLXXGTLYLSAVLGXXLG 446
            FF +LF+  A+  YIL   F  SF+++F+V   L A+D W VKNVSGR+L GLRW NE    GES+W FE  D  S  R N  D       LYL   +   LG
Sbjct:   52 FFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRWRNETGVDGESIWIFESAD-PSRPR-NAVDQKTFWYALYLYPFIWIILG 152          
The following BLAST results are available for this feature:
BLAST of CF421339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
FA18_ARATH2.277e-4481.48Uncharacterized FAM18-like protein At1g09330 OS=Ar... [more]
FA18_DROME4.325e-1941.88Uncharacterized FAM18-like protein CG5021 OS=Droso... [more]
TVP23_YARLI4.782e-1847.42Golgi apparatus membrane protein TVP23 OS=Yarrowia... [more]
YC2L_CAEEL6.905e-1745.35Uncharacterized FAM18-like protein C34D4.4 OS=Caen... [more]
FA18A_DICDI1.538e-1641.00Uncharacterized FAM18-like protein 1 OS=Dictyostel... [more]
FA18B_BOVIN2.624e-1649.30Protein FAM18B OS=Bos taurus GN=FAM18B PE=2 SV=1[more]
TVP23_LACBS7.634e-1645.92Golgi apparatus membrane protein TVP23 OS=Laccaria... [more]
FA18B_MOUSE7.634e-1639.78Protein FAM18B OS=Mus musculus GN=Fam18b PE=1 SV=1[more]
FA18A_HUMAN7.634e-1652.86Protein FAM18A OS=Homo sapiens GN=FAM18A PE=2 SV=3[more]
TVP23_SCHPO9.970e-1645.63Golgi apparatus membrane protein tvp23 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_118000-348 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-8T3_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF421339 ID=CF421339; Name=CF421339; organism=Citrus trifoliata; type=EST; length=462bp
GCCGAGAAATATTTCGCCTGCAAATTTATCGACTCTCAAAATTAAACCCC
AACAAGATTTAAATTGCGAAAATAGATTCGCGTAATGGATCTCAATCAGC
CTCCTGGTGAAAATTATGCCGAACCCAAAGACATGCCTTCTTTCATGTTC
TCTTCAAGGGCGCAGCTTTGGCATTTTACATACTTTCTGCCCTCTTTTTC
GACAGCTTTGTCATCATTTTTGTGGTGACTGTCCTTCTTGCTGCTCTTGA
TTTTTGGGTAGTCAAGAATGTTAGTGGGCGTATATTANTTGGTTTGAGGT
GGTGGAATGAAATAAATGATATGGGTGAGAGTGTGTGGAAGTTTGAGTGC
CTTGACCATGAGTCCATGGCTCGCATGAACAANAAAGATTCCTGGCTATT
NNGGGGGACCCTTTACCTTTCGGCTGTGCTTGGATNGNGCTTGGGATATT
TTCTCTCNTTAG
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