FE896219

Overview
NameFE896219
Unique NameFE896219
TypeEST
OrganismCitrus trifoliata ()
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 7.635e-69
Identity = 128/142 (90.14%), Postives = 131/142 (92.25%), Query Frame = -1
Query:    3 RVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 428
            +VDFKEPVWF      FS +G L  LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL+NPVANNAWVYATKF
Sbjct:  121 KVDFKEPVWFKAGSQIFS-DGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKF 261          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 3.547e-66
Identity = 124/141 (87.94%), Postives = 129/141 (91.49%), Query Frame = -1
Query:    3 VDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 425
            V+FKEPVWF      FS EG L  LGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL++PVANNAWV+ATKF
Sbjct:  125 VEFKEPVWFKAGSQIFS-EGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKF 264          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.653e-50
Identity = 106/147 (72.11%), Postives = 116/147 (78.91%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNL+HAQSILAV   QVVLMGL+EG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT F
Sbjct:  120 KNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNF 261          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.078e-50
Identity = 106/147 (72.11%), Postives = 116/147 (78.91%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT F
Sbjct:  118 KNG--VKFGEAVWFKAGAQIFS-EGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNF 259          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.078e-50
Identity = 106/147 (72.11%), Postives = 116/147 (78.91%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT F
Sbjct:  118 KNG--VKFGEAVWFKAGAQIFS-EGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNF 259          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.078e-50
Identity = 106/147 (72.11%), Postives = 116/147 (78.91%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNLVHAQSILA+   QVVLMGL+EG+R+ G P +GEG D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW +AT F
Sbjct:  119 KNG--VQFGEAVWFKAGAQIFS-EGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNF 260          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 7.938e-50
Identity = 106/147 (72.11%), Postives = 115/147 (78.23%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT F
Sbjct:  120 KNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNF 261          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.037e-49
Identity = 106/147 (72.11%), Postives = 115/147 (78.23%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT F
Sbjct:  120 KNG--VKFGEAVWFKAGSQIFS-EGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNF 261          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.768e-49
Identity = 105/147 (71.43%), Postives = 115/147 (78.23%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT F
Sbjct:   92 KNG--VTFGEAVWFKAGSQIFS-EGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNF 233          
BLAST of FE896219 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 5.145e-49
Identity = 104/147 (70.75%), Postives = 115/147 (78.23%), Query Frame = -1
Query:    3 RNGFRVDFKEPVWFXXWXSRFSQEGXLXXLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 440
            +NG  V F E VWF      FS EG L  LGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW +AT F
Sbjct:  120 KNG--VTFGEAVWFKAGSQIFS-EGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNF 261          
The following BLAST results are available for this feature:
BLAST of FE896219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB23_SOLLC7.635e-6990.14Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU3.547e-6687.94Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_TOBAC4.653e-5072.11Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ6.078e-5072.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.078e-5072.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI6.078e-5072.11Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI7.938e-5072.11Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC1.037e-4972.11Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB25_SOLLC1.768e-4971.43Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP5.145e-4970.75Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank description1SSH127 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH127, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896219 ID=FE896219; Name=FE896219; organism=Citrus trifoliata; type=EST; length=455bp
ACAAACTTGGTAGCATAGACCCAAGCATTGTTGGCAACAGGGTTCTCAAG
GTGGTCCAGGAGGTTCTCCAAGGGACCTTTGCCTGTCACAATAGCTTGGA
CAAAGAAACCAAACATGGAAAACATAGCTAGCCTGCCATTCTTGATTTCC
TTCACCTTGAGTTCAGCAAACGTAACAGGATCATCAGCAAGGCCAAGGGG
ATCAAAATATTGGCCACCAGGGTAGAGGTCGTTTCCTTCTCCGACACCAG
GGAGGCCATTGATACGGAAACCCTCAACGAGCCCCATGAGGACAACCTGG
AATCCCAGGACAGCCAGAATGCTTTGAGCATGAACAAGGTTGGGGTTTCC
CAANTANTCAAGGNCACCTTCTTGAGAAAATCTTGANCTCCANCNTTNGA
ACCAAACCGGTTCCTTGAAGTCTACCCTAAANCCATTTCTCNAGAAACTT
CAGGG
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