FE896220

Overview
NameFE896220
Unique NameFE896220
TypeEST
OrganismCitrus trifoliata ()
Sequence length396
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            ++PC PGK YYGRGP+Q++ N NYG AGK IGFDGLR P+ VA+DP +SFKTALWFWM NVH VM+QGFGATI+ INGA+EC GK P  V AR+ YYKDYC +FGV PG NL C
Sbjct:  172 QWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.703e-45
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            ++PC PGK YYGRGP+Q++ N NYG AG+ IGFDGLR P+ VA+DP +SFKTALWFWM NVH VM QGFGATI+ INGA+EC GK P  V AR+ YYKDYC +FGVDPG NL C
Sbjct:  175 QWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.175e-40
Identity = 72/114 (63.16%), Postives = 88/114 (77.19%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            ++PC  G+ YYGRGP+Q++ N NYG AG+ IGF+GL  P  VA+D V++FKTALWFWM NVH VM QGFGATI+ INGA+EC G  PAQ+ AR+ YYK YC +  VDPGPNL C
Sbjct:  167 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.216e-39
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 2
Query:   11 RPGRYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            +  +YPC  GK YYGRGP+QL+ N NY  AG+AIGFDGL  PE VA D   SFK A+WFWMTNVH VMNQGFGAT + INGA+EC G+   Q   RI++YK YC  FGV PG NL+C
Sbjct:  172 KAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.895e-39
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            ++PC  G+ YYGRGP+Q++ N NYG AG+AIGFDGL  P  VA+D VV+FK ALWFWM +VH V+ QGFGAT + +  A+ECGG  PAQ+ AR+ YY+ YC + GVDPGPNL+C
Sbjct:  156 QWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.895e-39
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            +YPC   K Y+GRGPIQL+ N NYG AG A  FDGL APETV+ D VVSFKTALW+WM +V PV+NQGFGATI+ INGA+EC G  P  VQAR+ YY +YC + GV  G NL+C
Sbjct:  157 QYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.200e-38
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP--VMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            ++PC+ GK YYGRGP+Q++ N NYG AG++IGFDGL  P+ VA+ PV++F+TALW+W  NVH   V  QGFGATI+ INGA+EC GK P  V  R+ YY+ +C +FGVDPG NL+C
Sbjct:  156 QWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.180e-38
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            +YPC PGK Y+GRGPIQL+ N NYGA G+++  + L  PE V+ +P V+F+T LWFWM +V PV+NQGFGATI+ ING +EC G     V ARI YY+DYC + GVDPGPNLSC
Sbjct:  156 QYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.009e-32
Identity = 65/118 (55.08%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWM-TNVHPVM---NQGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC 361
            +YPC P K Y+GRGP+QL+ N NY  AGK + FDGL  P+ V +DP++SFKT+LWFW+   V  V+   NQGFGATI+ ING  EC G   AQ+ AR+ YY++YC + GV PG NL C
Sbjct:  133 QYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of FE896220 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.146e-30
Identity = 69/137 (50.36%), Postives = 81/137 (59.12%), Query Frame = 2
Query:   20 RYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQKINGAVECGGKQPAQVQARIEYYKDYCNKFGVDPGPNLSC*N 367
            ++PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTALWFWMT      + H V+                 GFG     ING +ECG  Q ++V  RI +YK YC+  GV  G NL C N
Sbjct:  125 QWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYN 261          
The following BLAST results are available for this feature:
BLAST of FE896220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ1.585e-4569.30Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ2.703e-4569.30Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.175e-4063.16Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU2.216e-3962.39Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE2.895e-3960.53Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU2.895e-3964.04Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI6_ORYSJ3.200e-3858.62Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA4.180e-3860.53Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA2.009e-3255.08Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIC_SECCE7.146e-3050.36Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]

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Properties
Property NameValue
Genbank description1SSH128 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH128, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896220 ID=FE896220; Name=FE896220; organism=Citrus trifoliata; type=EST; length=396bp
TTCGAGCGGCCGCCCGGGCAGGTACCCATGTGTTCCCGGAAAGTTCTACT
ACGGCCGTGGACCGATCCAACTCACCGGAAATGGCAACTACGGAGCTGCC
GGAAAAGCTATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAA
GGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAATG
TGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAAAATCAAT
GGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCAT
AGAATATTATAAGGATTATTGCAACAAATTTGGTGTTGATCCTGGCCCAA
ATCTCTCTTGTTAAAATGTTTTCGCCGATACTTCACTGGCTTGTTG
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