FE896218

Overview
NameFE896218
Unique NameFE896218
TypeEST
OrganismCitrus trifoliata ()
Sequence length279
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PRXQ_POPJC (Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.333e-30
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 PRTPPSQSLAIPSKSSSQSQFYGLGFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            P T  SQ+L I SKSS QSQFYGL FS S++L IPSS+S K +I AKV+KGQAPPSFTLKDQ+G+ +SLSKFKGKPVVVYFYPADETPG
Sbjct:   20 PITSSSQNLPILSKSS-QSQFYGLKFSHSTSLSIPSSSSVKNTIFAKVNKGQAPPSFTLKDQDGKTLSLSKFKGKPVVVYFYPADETPG 107          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PERQ_SEDLI (Peroxiredoxin Q, chloroplastic (Fragment) OS=Sedum lineare GN=PRXQ PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.435e-24
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   40 KSSSQSQFYGLGFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            ++SSQSQF+GL FS +S+   PS+   K SI AKV+KG  PP FTLKDQEGR VSLSKFKGKPVVVYFYPADETPG
Sbjct:    4 QTSSQSQFHGLKFSHASSFKSPSAPLRKNSIFAKVTKGSTPPPFTLKDQEGRPVSLSKFKGKPVVVYFYPADETPG 79          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PERQ_SUASA (Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 PRTPPSQSLAIPSKSSSQSQFYGLGFSFSSNLPIPS-STSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            P+   SQ+L+I SKS+  SQF G+  S SS+L  P    S+K SI AKVS+G  PP+FTLKDQ+G+NVSLSKFKGKPVVVYFYPADETPG
Sbjct:   20 PKPHSSQNLSIISKSA-HSQFCGIKLSHSSSLSPPLYPRSYKASIVAKVSEGSMPPAFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPG 108          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PRXQ_GENTR (Peroxiredoxin Q, chloroplastic OS=Gentiana triflora GN=AFP1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   46 SSQSQFYGLGFSFSS--NLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            SSQSQ  GL F  SS  +LP P S S + S+ AKVSKG  PP FTLKDQ+G+NVSL++FKGKPVVVYFYPADETPG
Sbjct:   36 SSQSQICGLKFLISSPSSLPPPPSYSARISVFAKVSKGSVPPQFTLKDQDGKNVSLTEFKGKPVVVYFYPADETPG 111          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PRXQ_ARATH (Peroxiredoxin Q, chloroplastic OS=Arabidopsis thaliana GN=PRXQ PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   28 AIPSKSSSQSQFYGLGFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            ++P+KSS +S F+G   + SS +   SS+S K  I AKV+KGQA P FTLKDQ G+ VSL K+KGKPVV+YFYPADETPG
Sbjct:   32 SVPTKSS-ESNFFGSTLTHSSYISPVSSSSLKGLIFAKVNKGQAAPDFTLKDQNGKPVSLKKYKGKPVVLYFYPADETPG 110          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PRXQ_WHEAT (Peroxiredoxin Q, chloroplastic OS=Triticum aestivum GN=PRX1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    7 TPPSQS-LAIPSKSSSQSQFYGLGFSFSSNL--PIPSSTSFKTSI-SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            +PPSQ+ L  PS S++   F+GL    S+    P P   +  T I   KVSKG  PP+FTLKDQ+G+ VSLSKFKGKPVV+YFYPADETPG
Sbjct:   24 SPPSQARLCRPSTSAA---FHGLRAPASAFALAPAPRRRAASTGIVCGKVSKGSVPPNFTLKDQDGKTVSLSKFKGKPVVLYFYPADETPG 111          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PRXQ_ORYSJ (Peroxiredoxin Q, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0196300 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  100 IPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            +PS+T     +  KVSKG A P+FTL+DQ+GR VSLSKFKG+PVVVYFYPADETPG
Sbjct:   56 LPSTTGRNRIVCGKVSKGSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPG 111          
BLAST of FE896218 vs. ExPASy Swiss-Prot
Match: PRXQ_ORYSI (Putative peroxiredoxin Q, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_22010 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  100 IPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG 267
            +PS+T     +  KVSKG A P+FTL+DQ+GR VSLSKFKG+PVVVYFYPADETPG
Sbjct:   56 LPSTTGRNRIVCGKVSKGSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPG 111          
The following BLAST results are available for this feature:
BLAST of FE896218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PRXQ_POPJC9.333e-3075.28Peroxiredoxin Q, chloroplastic OS=Populus jackii G... [more]
PERQ_SEDLI3.435e-2472.37Peroxiredoxin Q, chloroplastic (Fragment) OS=Sedum... [more]
PERQ_SUASA9.995e-2465.56Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=... [more]
PRXQ_GENTR4.199e-2269.74Peroxiredoxin Q, chloroplastic OS=Gentiana triflor... [more]
PRXQ_ARATH6.704e-2061.25Peroxiredoxin Q, chloroplastic OS=Arabidopsis thal... [more]
PRXQ_WHEAT8.195e-1857.14Peroxiredoxin Q, chloroplastic OS=Triticum aestivu... [more]
PRXQ_ORYSJ1.546e-1669.64Peroxiredoxin Q, chloroplastic OS=Oryza sativa sub... [more]
PRXQ_ORYSI1.546e-1669.64Putative peroxiredoxin Q, chloroplastic OS=Oryza s... [more]
back to top
Properties
Property NameValue
Genbank description1SSH126 juvenile early flowering trifoliate orange mutant subtracted cDNA library Citrus trifoliata cDNA clone SSH126, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE896218 ID=FE896218; Name=FE896218; organism=Citrus trifoliata; type=EST; length=279bp
CCCAGAACCCCACCTTCCCAAAGCCTCGCAATTCCCTCCAAATCATCATC
ACAGTCTCAATTTTATGGCCTCGGGTTCTCTTTTTCTTCCAACTTGCCAA
TCCCATCTTCCACATCTTTCAAGACTTCCATTTCTGCCAAGGTGAGCAAA
GGACAGGCGCCTCCTTCCTTCACATTGAAAGATCAAGAGGGCAGGAATGT
GAGCCTATCCAAGTTTAAAGGGAAGCCCGTGGTTGTTTATTTTTACCCTG
CTGATGAGACACCTGGCCGCGACCACGCT
back to top