GE213229

Overview
NameGE213229
Unique NameGE213229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2258 contig Csv1_Contig2258:36..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.675e-34
Identity = 77/148 (52.03%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    7 VVAAEVSSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            V ++ +SSPT   ++SC+       N +  +   HLAAF P  HLF        R   ++ ++ T IFLPHLVASME+VEETYIM+KPDGVQRGLVG+IISRFE             CPK+LAEEHYKDL SKPFFPKLI+Y+   P+
Sbjct:   13 VSSSALSSPT--SRLSCAPSCKLILNPI--KKNHHLAAFQPAVHLFASNQ---SRSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPV 153          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.715e-32
Identity = 73/125 (58.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   76 SSNKLTLRTTSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            S  ++  RT   LAAF PQ  LF +     +R+  A +S E+GIFLPHLVASME VEETYIMVKPDG+QRGLVG+IISRFE            QCPK+LAEEHYKDL++K FFP LIEY+   P+
Sbjct:   31 SPARVNFRTA--LAAFRPQFRLFSR-NSASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPV 152          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.319e-31
Identity = 74/143 (51.75%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   52 SCSRRLSYSSNKLT------LRTTSH----LAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +C   L +SS+  T       R  +H    LAAFH QSHLF    P        + S +  IFLPHLVASMEQVEETYIM+KPDGVQRGLVG+IISRFE             CPK+LAEEHYKDL +K F+ KLI+Y+   P+
Sbjct:   12 NCISSLPHSSSTTTRHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPV 154          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.192e-29
Identity = 67/121 (55.37%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   94 LRTTSHLAAFHPQSHLFVKFPPCPQRKTV--ARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            LRTT +L+AF  +SHLF               R+S E+GIFLP L+ S+EQV++ YIMVKPDGVQRGLVG+IISRFE            QC K+LAEEHYK LN K FFPKLIEY+   P+
Sbjct:   31 LRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPV 151          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E+++IM+KPDGVQRGL+GDIISRFE               +  A++HY DL+ KPFFP L+EY+   P+
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E+++IM+KPDGVQRGL+GDIISRFE               +  A++HY DL+ KPFFP L+EY+   P+
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.374e-14
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  244 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            E T+I VKPDGVQR +VG++I RFE            Q PKDL E+HY +L+ KPF+PKLI+Y+   P+
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPV 72          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E+T+IM+KPDGVQRGLVG+IISRFE               +  AE+HY DL++KPFF  L+EY+   P+
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E+T+IM+KPDGVQRGLVG+IISRFE               +  AE+HY DL++KPFF  L+EY+   P+
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPV 70          
BLAST of GE213229 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.564e-13
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  241 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYLPGRPL 450
            +E +++MVKPDGVQRGL+G++ISR E            +  ++LAEEHY  L  KPFFP LIE++   P+
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPV 70          
The following BLAST results are available for this feature:
BLAST of GE213229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NDK2_TOBAC4.675e-3452.03Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH5.715e-3258.40Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_SPIOL6.319e-3151.75Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA1.192e-2955.37Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK1_ORYSJ3.150e-1448.57Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI3.150e-1448.57Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK_GINCI5.374e-1450.72Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK1_SPIOL1.197e-1350.00Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK1_MESCR1.197e-1350.00Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDK_SYMTH1.564e-1347.14Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]

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Properties
Property NameValue
Genbank description76 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213229 ID=GE213229; Name=GE213229; organism=Citrus sinensis; type=EST; length=454bp
ATTAGCGTGGTCGCGGCCGAGGTATCATCACCAACTCTGGTTGGGAAGAT
AAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTGCGCA
CCACCAGCCACCTTGCAGCATTCCACCCACAGTCCCATCTTTTCGTAAAA
TTCCCACCATGTCCTCAACGCAAAACAGTTGCTCGCAACTCCAACGAAAC
CGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGGAGA
CTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGCGAC
ATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGACTGGCTTGAAGCT
CTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATAAGGATCTCAATT
CCAAACCATTTTTTCCTAAACTGATTGAGTACCTGCCCGGGCGGCCGCTC
GAAA
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