EY739374

Overview
NameEY739374
Unique NameEY739374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY739374 vs. ExPASy Swiss-Prot
Match: VDLD_HELPY (Protein vdlD OS=Helicobacter pylori GN=vdlD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 VVYREPIHVRELVTFLAAVNYTGRTSMEIGINVVTDDIRNKLVRHTNSCYFTMVAVDHNCAPTAVPPLAPHNLEEKHHFYAARLRRDLR 270
            V ++ PI V  L+TFLA++NY G TS E+GI V+++DI+ + + HTNSCYFTMVAV+ N  PT +P   P    E   +  A  R+++R
Sbjct:   74 VTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVE-NGKPTPMPKYEPKTEVEIRRYEGALKRKEMR 161
[Close]
BLAST of EY739374 vs. ExPASy Swiss-Prot
Match: VDLD_HELPJ (Protein vdlD OS=Helicobacter pylori J99 GN=vdlD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 VVYREPIHVRELVTFLAAVNYTGRTSMEIGINVVTDDIRNKLVRHTNSCYFTMVAVDHNCAPTAVPPLAPHNLEEKHHFYAARLRRDLR 270
            V ++ PI V  L+TFLA++NY G TS E+GI V+++DI+ + + HTNSCYFTMVAV+ N  PT +P   P    E   +  A  R+++R
Sbjct:   74 VTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVE-NGKPTPMPKYEPKTEVEIRRYEGALKRKEMR 161
The following BLAST results are available for this feature:
BLAST of EY739374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VDLD_HELPY9.340e-1646.07Protein vdlD OS=Helicobacter pylori GN=vdlD PE=3 S... [more]
VDLD_HELPJ9.340e-1646.07Protein vdlD OS=Helicobacter pylori J99 GN=vdlD PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-056-E09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739374 ID=EY739374; Name=EY739374; organism=Citrus sinensis; type=EST; length=860bp
CAGGTCGTGTACCGCGAGCCGATCCACGTCCGCGAGCTGGTGACCTTCCT
GGCGGCGGTGAACTACACGGGCCGCACCTCGATGGAAATCGGCATCAACG
TGGTCACCGATGACATCCGCAATAAACTGGTGCGCCACACCAACAGCTGT
TACTTCACGATGGTGGCGGTGGACCACAACTGCGCCCCCACCGCTGTGCC
GCCGCTGGCGCCACACAACCTCGAGGAAAAACATCACTTCTATGCCGCCC
GCCTGCGCCGGGATCTGCGCCAAGAAATGTAACGGCGCCAAGAATATATC
CAACGCTAAACCGACAATGAAGGGTGAGCCCCCACGCCGTAAGCGCTTAG
GTCGCTAACTGCCACCCGATGGGGCTGCCCGTCCAAGGCGGTGGACCAAC
ATGATGGTACGAAACGCCTCCATGCTCCATCACGCTTCGCGCGCAACCCG
GCCTCTGGCGGGGCATGGAACACCTTGTGGCTGCACGGCCATGGTCGGGG
CAGCCCCCAAGAATGGCTGCCCTCCCCTCGCACAAGATCGGAACAGACAG
CAGTGCGGCCACACCCACCCGCGATTCCACTGAAGGTCCCCGGCCGCCAC
AAAGGCGCCTCCCCCCCCGGAGCCCGCACGGGGGGGGTCCCCGCGGGCGG
GGCGGTTCTCCTGCCTAGTCACGACGCAAAATAAGGACTAGGGTCCTTGT
GGACTCCTGTCCGACCCTGTTGGGGCGGGTGGGTGGGGAGGGGGGCAGAG
GGCGGGGCCTGCTGTTATCTATGCAGCCCGCTCAAAAAAAATTAGGTGAT
AAACCGGACCCCTCGCCCCGTGCCCGCCGATGCGGGAGCACCCGTCCCTG
CATCCCCCCC
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