EY736446

Overview
NameEY736446
Unique NameEY736446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736446_ssr37 microsatellite EY736446_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_ACTSZ (Nucleoside diphosphate kinase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.024e-18
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+TL++IKPD +  N   +I     E+GF I+  +++RL++  A+ FYAEH  + FF  L++YMTS PV+  VLEK+NA+ D+R LIG TD ++A
Sbjct:    4 ERTLSIIKPDAVERNLVGKILSRFEENGFQIVAMKMLRLNQAQAEGFYAEHQGKPFFDGLVEYMTSAPVVVSVLEKDNAVKDYRTLIGATDPQQA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK7_MOUSE (Nucleoside diphosphate kinase 7 OS=Mus musculus GN=Nme7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.185e-18
Identity = 43/107 (40.19%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  176 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVL 496
            KEKTLA+IKPD +S     EI ++I +SGF+I + R++ L    A  F+ +H SR F++ LI+++TSGPV+AM + +++AI +W+ L+GP ++  +    P  +  L
Sbjct:  110 KEKTLALIKPDAVSK--AGEIIEMINKSGFTITKLRMMTLTRKEAADFHVDHHSRPFYNELIQFITSGPVIAMEILRDDAICEWKRLLGPANSGLSRTDAPGSIRAL 214          

HSP 2 Score: 28.8758 bits (63), Expect = 2.185e-18
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 3
Query:  618 TIRAMFGLDSENNCVHGF*LSVSGPRR-DVFFLSRGVC 728
            +IRA+FG D   N  HG     S  R  ++FF S G C
Sbjct:  210 SIRALFGTDGVRNAAHGPDTFASAAREMELFFPSSGGC 247          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_GEOSM (Nucleoside diphosphate kinase OS=Geobacter sp. (strain M21) GN=ndk PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.978e-18
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T A+IKPD +  N T ++  +I E GF I+  + +RL +  A+ FY  H  R FF  L  +M+ GPV+A+VLEKENAI DWRAL+G T+   A
Sbjct:    2 ERTFAIIKPDAVERNVTGKVLAMIEEGGFKIVGMKKIRLSKCQAEGFYYVHKERPFFGDLCAFMSRGPVIALVLEKENAIADWRALMGATNPANA 96          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_BRAJA (Nucleoside diphosphate kinase OS=Bradyrhizobium japonicum GN=ndk PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.978e-18
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVLPFG 505
            E+T ++IKPD  + N T  +  VI ++G  I+ ++ +R+ ++ A+TFYA H +R FF  L+++MTSGPV+  VLE ENA+  +R  +G TD  KA      +LY    G
Sbjct:    4 ERTFSIIKPDATARNLTGAVNAVIEKAGLRIVAQKRIRMTKEQAETFYAVHKARPFFGELVEFMTSGPVVVQVLEGENAVAKYRDAMGATDPSKAAEGTIRKLYAKSIG 112          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_MANSM (Nucleoside diphosphate kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ndk PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T ++IKPD +  N   +I     +SGF I+  ++VRL +  A+ FYAEH  + FF  L++YM S P+L  VL+KENA+ D+R LIG TD  KA
Sbjct:    4 ERTFSIIKPDAVERNLIGKILARFEQSGFEIVAAKMVRLTKAQAEGFYAEHQGKPFFEDLVEYMVSAPILVSVLQKENAVKDYRTLIGATDPAKA 98          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK7_BOVIN (Nucleoside diphosphate kinase 7 OS=Bos taurus GN=NME7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.253e-18
Identity = 39/108 (36.11%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  173 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVL 496
            +KEKTLA+IKPD +S     EI ++I ++GF++ + +++ L    A  F+ +H SR F + LI+++TSGP++AM + +++A+ +W+ L+GP ++  A    P  +  L
Sbjct:   90 KKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAVCEWKRLLGPANSGLARTDAPESIRAL 195          

HSP 2 Score: 28.8758 bits (63), Expect = 6.253e-18
Identity = 15/38 (39.47%), Postives = 21/38 (55.26%), Query Frame = 3
Query:  618 TIRAMFGLDSENNCVHG-F*LSVSGPRRDVFFLSRGVC 728
            +IRA+FG D   N  HG    + +    ++FF S GVC
Sbjct:  191 SIRALFGTDGIKNAAHGPDSFACAAREMELFFPSSGVC 228          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_OLICO (Nucleoside diphosphate kinase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=ndk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLYVLPFG 505
            E+T ++IKPD  + N T  +  +I ++G  I+ ++ +R+  + A+TFYA H +R FF  L+ +MTSGPV+  VLE +NAI+ +R ++G TD  KA      +++ L  G
Sbjct:    4 ERTFSIIKPDATARNLTGAVNAIIEKAGLRIIAQKRIRMTREQAETFYAVHKARPFFGELVDFMTSGPVVVQVLEGDNAISKYREVMGATDPSKAADGTIRKVHALSIG 112          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_LEPBL (Nucleoside diphosphate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ndk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  182 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLY 490
            KT  MIKPDG+   +   I   I + GF IL  + ++L  + AK FY  HS+R F+S L  YM+SGP++A  LE++NA+  WR +IG TD K+A       LY
Sbjct:    3 KTFIMIKPDGVKNKHVGNILARIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYSDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALY 105          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_LEPBJ (Nucleoside diphosphate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ndk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  182 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAXISHPHRLY 490
            KT  MIKPDG+   +   I   I + GF IL  + ++L  + AK FY  HS+R F+S L  YM+SGP++A  LE++NA+  WR +IG TD K+A       LY
Sbjct:    3 KTFIMIKPDGVKNKHVGNILARIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYSDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALY 105          
BLAST of EY736446 vs. ExPASy Swiss-Prot
Match: NDK_GEOBB (Nucleoside diphosphate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ndk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.666e-18
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  179 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 463
            E+T A+IKPD +  N T ++  +I E GF I+  + +RL +  A+ FY  H  R FF  L  +M+ GPV+A+VLEKENAI DWR L+G T+   A
Sbjct:    2 ERTFAIIKPDAVERNVTGKVLAMIEEGGFKIVGMKKIRLSKCQAEGFYYVHKERPFFGDLCAFMSRGPVIALVLEKENAIADWRGLMGATNPANA 96          
The following BLAST results are available for this feature:
BLAST of EY736446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ACTSZ1.024e-1846.32Nucleoside diphosphate kinase OS=Actinobacillus su... [more]
NDK7_MOUSE2.185e-1840.19Nucleoside diphosphate kinase 7 OS=Mus musculus GN... [more]
NDK_GEOSM2.978e-1847.37Nucleoside diphosphate kinase OS=Geobacter sp. (st... [more]
NDK_BRAJA2.978e-1840.37Nucleoside diphosphate kinase OS=Bradyrhizobium ja... [more]
NDK_MANSM5.080e-1846.32Nucleoside diphosphate kinase OS=Mannheimia succin... [more]
NDK7_BOVIN6.253e-1836.11Nucleoside diphosphate kinase 7 OS=Bos taurus GN=N... [more]
NDK_OLICO6.635e-1838.53Nucleoside diphosphate kinase OS=Oligotropha carbo... [more]
NDK_LEPBL6.635e-1843.69Nucleoside diphosphate kinase OS=Leptospira borgpe... [more]
NDK_LEPBJ6.635e-1843.69Nucleoside diphosphate kinase OS=Leptospira borgpe... [more]
NDK_GEOBB8.666e-1846.32Nucleoside diphosphate kinase OS=Geobacter bemidji... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736446 ID=EY736446; Name=EY736446; organism=Citrus sinensis; type=EST; length=787bp
TAGGTCACCACGCGTCCGCTCAAAATTTGGTTTTCATATTTATTTATTTC
TTCATTGCTTCTGTATTAAGGTTTCAACAGTGGGAACTTTTGAAATGATT
CTTCGTGTTGTTGGGCTCTTCATTTTGGCCTGCATCTCTTCTCCCTGCAG
GTCTTTGAGCAATGGAAGTGTGGAAAAGGAGAAAACATTGGCTATGATAA
AGCCTGATGGATTGTCTGGTAACTACACTGATGAAATCAAAAAGGTGATT
CTGGAGTCTGGTTTCAGTATTTTGAGGGAAAGAGTGGTTCGACTTGATGA
GGATGGGGCGAAAACCTTTTACGCTGAGCACTCTTCAAGGAGCTTTTTTT
CTAGTCTTATCAAGTACATGACGAGTGGTCCAGTTTTAGCTATGGTTTTG
GAGAAGGAAAATGCCATTACTGATTGGCGTGCTTTGATTGGACCAACTGA
TGCAAAAAAGGCTANAATTTCTCATCCACACAGGTTATATGTGCTCCCAT
TTGGATAAATGTGTACTTGGTTATTATATAAACAGTTTGTGAGATTGACT
TACCTTTGTCACTGTACTTTTCTTTTGTGGCTGGTGATTTCTTGTCCATG
TTCCCTTGAATACTTCCACCATTAGGGCCATGTTCGGCTTGGATTCAGAA
AACAATTGTGTTCATGGGTTCTGACTCTCCGTGAGCGGCCCGAGGAGAGA
TGTCTTTTTTCTCTCAAGAGGTGTCTGCCCATGAGGTGAGGTGAAACAAT
GACTGGTGGGTGGGAAGCCCTTGAAGAAGAGCATGGG
back to top