EY736440

Overview
NameEY736440
Unique NameEY736440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736440_ssr68 microsatellite EY736440_ssr68:68..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9661 contig Csv1_Contig9661:714..1541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736440 vs. ExPASy Swiss-Prot
Match: LDHD_MOUSE (Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.509e-25
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 3
Query:   18 VKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAV 188
            +  L+ ED  VVVEPG+    LN +L   GL+FP+DPG  A++ GM AT  SG+ AV
Sbjct:  122 ITELNTEDFSVVVEPGVTRKALNTHLRDSGLWFPVDPGADASLCGMAATGASGTNAV 178          

HSP 2 Score: 51.9878 bits (123), Expect = 2.509e-25
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 3
Query:  300 ATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMIS 494
            ATC FP+++ A D  +  + + + V+R+E LD+V + A N  +  N P  PTL  EF G+++ ++
Sbjct:  249 ATCAFPSVQAAVDSTVQILQAAVPVARIEFLDDVMMDACNRHSKLNCPVAPTLFLEFHGSQQTLA 313          

HSP 3 Score: 48.521 bits (114), Expect = 2.509e-25
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:  190 ACRYGTMRDNVINLKVVLANGDVVKTASRA---RKSAAGW 300
            A RYGTMRDNVINL+VVL +G ++ TA R    RKSAAG+
Sbjct:  177 AVRYGTMRDNVINLEVVLPDGRLLHTAGRGRHYRKSAAGY 216          
BLAST of EY736440 vs. ExPASy Swiss-Prot
Match: DLD1_KLULA (D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis GN=DLD1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.473e-15
Identity = 61/188 (32.45%), Postives = 82/188 (43.62%), Query Frame = 3
Query:   27 LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAV------------------------------SM*VWNYARQCH*SEGSSCQWRXXXXXXXXXXXXXRVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVN---IANGKNLPELPTLMFEFIGTREMI 491
            L+ ED+DVVV+ G+ W ELNEYL  +GL F  DPGPGA I G  A  CSG+ A                               S   +N       SEG+                   VA   FPT+ DAA  +   + +GIQ++ +ELLD+  ++ +N     +  N  E PTL F+  G  E I
Sbjct:  206 LNKEDLDVVVQGGVPWEELNEYLNDHGLLFGCDPGPGAQIAGCIANSCSGTNAYRYGTMKENVVNITMCMADGTIVKTKRRPRKSSAGYNLNGLIIGSEGTLGIVTEATIKCHVRSTFETVAVVPFPTVSDAASCSSHLIQAGIQLNAMELLDDNMMKIINQSGATSKDNWVESPTLFFKIGGRSEQI 393          
BLAST of EY736440 vs. ExPASy Swiss-Prot
Match: LDHD_HUMAN (Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.727e-14
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 3
Query:   27 LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAV 188
            L+ ED  VVVEPG+    LN +L   GL+FP+DPG  A++ GM AT  SG+ AV
Sbjct:  125 LNQEDFSVVVEPGVTRKALNAHLRDSGLWFPVDPGADASLCGMAATGASGTNAV 178          

HSP 2 Score: 43.8986 bits (102), Expect = 3.727e-14
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1
Query:  190 ACRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGW 300
            A RYGTMRDNV+NL+VVL +G ++ TA R R    G+
Sbjct:  177 AVRYGTMRDNVLNLEVVLPDGRLLHTAGRGRHFRFGF 213          
BLAST of EY736440 vs. ExPASy Swiss-Prot
Match: DLD1_YEAST (D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae GN=DLD1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.658e-12
Identity = 55/179 (30.73%), Postives = 79/179 (44.13%), Query Frame = 3
Query:   39 DMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLA----------VSM*V--------------------WNYARQCH*SEGSSCQWRXXXXXXXXXXXXXRVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK---NLPELPTLMFEFIG 476
            D+D+ V+ G+ W +LN+YL  +GL F  DPGPGA IGG  A  CSG+ A          ++M +                    +N       SEG+                   VA  +F TIKDAA  A     SGI ++ +ELLDE  ++ +N +      +  E PT+ F+  G
Sbjct:  217 DLDITVQAGLPWEDLNDYLSDHGLMFGCDPGPGAQIGGCIANSCSGTNAYRYGTMKENIINMTIVLPDGTIVKTKKRPRKSSAGYNLNGLFVGSEGTLGIVTEATVKCHVKPKAETVAVVSFDTIKDAAACASNLTQSGIHLNAMELLDENMMKLINASESTDRCDWVEKPTMFFKIGG 395          
The following BLAST results are available for this feature:
BLAST of EY736440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LDHD_MOUSE2.509e-2549.12Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_KLULA7.473e-1532.45D-lactate dehydrogenase [cytochrome], mitochondria... [more]
LDHD_HUMAN3.727e-1451.85Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_YEAST2.658e-1230.73D-lactate dehydrogenase [cytochrome] 1, mitochondr... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-D03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736440 ID=EY736440; Name=EY736440; organism=Citrus sinensis; type=EST; length=828bp
CACGCGTCCGGAAAAGTGTTAAAGCATTACATATTGAGGACATGGATGTG
GTTGTTGAGCCTGGGATTGGATGGATGGAGCTTAATGAATACTTGGAGCC
ATATGGGTTATTCTTCCCTCTTGATCCTGGGCCTGGTGCAACCATTGGGG
GTATGTGTGCTACCCGCTGCTCTGGTTCCTTGGCTGTGAGCATGTAGGTA
TGGAACTATGCGCGACAATGTCATTAATCTGAAGGTAGTTCTTGCCAATG
GAGATGTTGTTAAGACAGCTTCTCGTGCTCGAAAAAGTGCTGCAGGGTGG
CAACATGTAACTTCCCAACTATTAAGGATGCAGCAGATGTAGCTATTGCT
ACTATGCTGTCTGGCATACAGGTGTCAAGGGTGGAGCTCCTGGATGAAGT
TCAAGTGAGGGCTGTCAATATTGCTAATGGGAAGAACTTGCCTGAACTTC
CAACTTTGATGTTTGAATTTATAGGCACTCGTGAGATGATATCACTTTTC
GCTTTTAACACATTTCTTTAATTAATGGCCATTTATTTGAACTTTTTCTT
CAGTATTTTAAGAATCTACTGTACCTCATATATGTACAGATTTCAAACTG
GCAAGACAAAGCATGAGCAATCTCACATTTTAAGCTTTTTTTCCGCTCAT
TATCTATATCATCAGTAGCTTCCAGCAAAAGGCGTATTTCANAAGTTGTC
TTCATTTTACCAGTGCTAACTTTTCTAATAAATTCTGTTTACACCTTCTT
AGAGGCATATTCACATGAGCAGACACTAATTGTTCAGAAGATTGTGTCTG
AGCACAATGGGTACTGATTTTATTTTTG
back to top