EY736201

Overview
NameEY736201
Unique NameEY736201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736201_ssr236 microsatellite EY736201_ssr236:236..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:23..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736201 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.180e-52
Identity = 113/177 (63.84%), Postives = 133/177 (75.14%), Query Frame = 1
Query:  145 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRVAMLGLVALAFTEFVKGGTLV 651
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR+AMLGLVALAFTEFVKG +LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of EY736201 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.049e-36
Identity = 90/200 (45.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:   76 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRVAMLGLVALAFTEFVKGGTLVTL 657
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGR AM+GLVALAFTE+VKGG L+ +
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199          
BLAST of EY736201 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32
Identity = 74/133 (55.64%), Postives = 93/133 (69.92%), Query Frame = 1
Query:  265 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRVAMLGLVALAFTEFVKGGTLVTL 657
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGR AMLGLVALA TEF+ G   V +
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231          
BLAST of EY736201 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 85/191 (44.50%), Postives = 111/191 (58.12%), Query Frame = 1
Query:   88 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRVAMLGLVALAFTEFVKGGTLVTL 657
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGR AMLGLVALA TE + G   + +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172          
BLAST of EY736201 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  292 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRVAMLGLVALAFTEFVKGGTLVTL 657
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGR AM+GLVALA TE + G   + +
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167          
BLAST of EY736201 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.424e-17
Identity = 60/128 (46.88%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  268 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRVAMLGLVALAFTEFVKG 639
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGR AM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of EY736201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA5.180e-5263.84Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.049e-3645.00Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU3.491e-3255.64High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.326e-3144.50Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.955e-3154.47Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA1.424e-1746.88Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-B09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736201 ID=EY736201; Name=EY736201; organism=Citrus sinensis; type=EST; length=765bp
CACGCGTCCGCGCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTT
CTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAAT
CTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCC
GGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAA
TGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGC
AGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAG
AAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGCGTTCAGCGGGCC
GGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTG
CATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCA
GACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGC
GTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATG
GGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGGTTGCTATGCTG
GGCCTGGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTTGT
TACCCTTAATTTTGGTTAAATCTGTAGATCTGTATTTTTTGAACCTATCA
ATGTATGAGATCCCTATGTAATTAAATCTCCATTTCTCACACAAAAAAAA
AAAGGGCGGCCGGTC
back to top