EY736172

Overview
NameEY736172
Unique NameEY736172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736172_ssr814 microsatellite EY736172_ssr814:814..825. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_PSEAE (Probable 2-dehydropantoate 2-reductase OS=Pseudomonas aeruginosa GN=panE PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.470e-69
Identity = 140/277 (50.54%), Postives = 169/277 (61.01%), Query Frame = 1
Query:    1 TWHVLCAGSLGTXXXXXXXXXXXXXXXXXXDHARVASYQTGKGLTLVEHGVAHTYPVVGETSDSPGPIHRLLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLGDASHPTPPLWLDDLQAAGIPHAWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAHQXXXXXXXXXXXXXXXXXGQPAAAQDLQSEVGT---GDPPHXVPLTIQVPRGGQCRATQINYVRGLACQGGR 822
            TWH+L AGSLG+                  D  R+  YQ   GL+LVE G A  YP+  ET D   PI RLL+ACKAYDA+EA + + HRLA +AEL+LLQNGLGSQ AVAA+LP++RC+FASSTEGAFR+ D+RVVFAG G+TWLGD      P WL  L  AGIPH+WS DIL RLWRKLALNCA +PLTVL+ CRNG L+ H                  G  AAA+ L  +V         +   +   V RG   R T+I Y+ G ACQ G+
Sbjct:    2 TWHILGAGSLGSLWAARLGRAGLPVRLILRDRQRLRRYQQAGGLSLVEDGQASLYPIAAETPDGGQPIQRLLLACKAYDAEEAASSVAHRLAGNAELLLLQNGLGSQQAVAARLPRSRCLFASSTEGAFRDGDFRVVFAGRGHTWLGDPRDTNAPAWLTQLSQAGIPHSWSDDILERLWRKLALNCAINPLTVLHDCRNGGLRQHPEEIAALCDELGQLLHASGYDAAARSLLEDVRAVIDATAANYSSMHQDVTRG---RRTEIGYLLGYACQHGQ 275          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_YERPE (2-dehydropantoate 2-reductase OS=Yersinia pestis GN=panE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASS-TEGAFRESDWRVVFAGHGYTWLGDASHPTPPLWLDDLQAAGIPH------AWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAH 615
            LLV  KA+    AV  L  +L P  +++LL NG+G+Q+    +LP    +F    T  A R     ++    G T +G    PT  + +DD   A   H      AW  DI    W+KLA+NC  +PLT LY CRNG++Q +
Sbjct:   67 LLVCLKAWQVSSAVTALLPKLNPECKILLLHNGMGTQE----ELPLNEHVFLHGVTTHAARRDGNTIIHVASGMTHIG----PTSSVIIDDNHLADTLHQALPDVAWHNDISAACWQKLAVNCVINPLTGLYNCRNGDVQRY 200          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_VIBCH (2-dehydropantoate 2-reductase OS=Vibrio cholerae GN=panE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLG--DASHPTPPLWLDDLQAAGIPHAWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQA 612
            LL+  KA+  + A+  L   L     L+ + NG+G+ +A++  L     +FA++T GA + +  +V   G G T +G  +A         D    A  P  W+ +I   LWRKLA+NCA +PLT ++QC NG L A
Sbjct:   63 LLITVKAWQVEAALQPLLPHLNRETILLFMHNGMGAVEAISESLTHFPVLFATTTHGALKATLNQVSHTGFGQTQVGPFNALGARCDFIADVFNHALAPVTWNPEIQQALWRKLAVNCAINPLTAIHQCANGALVA 198          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_ECO57 (2-dehydropantoate 2-reductase OS=Escherichia coli O157:H7 GN=panE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.409e-14
Identity = 57/207 (27.54%), Postives = 94/207 (45.41%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLGDASHPTPPL-WLDDLQAAGIPH-AWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAHQXXXXXXXXXXXXXXXXXGQPAAAQDLQSEVGTGDPPHXVPLTIQVPRGGQCRATQINYVRGLACQGGRA 825
            LLV  KA+   +AV  L   L     ++L+ NG+G+ + +  Q  Q   +  ++T  A R+ +  ++   +G T +G A        +L D+    +P  AW  +I   LWRKLA+NC  +PLT ++ C NGEL+ H                  G   +A+DL+  V          ++  +      R T+I+Y+ G   +  RA
Sbjct:   67 LLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEEL--QNIQQPLLMGTTTHAACRDGNV-IIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRTLRHTEIDYINGFLLRRARA 270          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_SHIFL (2-dehydropantoate 2-reductase OS=Shigella flexneri GN=panE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 57/207 (27.54%), Postives = 94/207 (45.41%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLGDASHPTPPL-WLDDLQAAGIPH-AWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAHQXXXXXXXXXXXXXXXXXGQPAAAQDLQSEVGTGDPPHXVPLTIQVPRGGQCRATQINYVRGLACQGGRA 825
            LLV  KA+   +AV  L   L     ++L+ NG+G+ + +  Q  Q   +  ++T  A R+ +  ++   +G T +G A        +L D+    +P  AW  +I   LWRKLA+NC  +PLT ++ C NGEL+ H                  G   +A+DL+  V          ++  +      R T+I+Y+ G   +  RA
Sbjct:   67 LLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEEL--QNIQQPLLMGTTTHAARRDGNV-IIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARA 270          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_ECOLI (2-dehydropantoate 2-reductase OS=Escherichia coli (strain K12) GN=panE PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 57/207 (27.54%), Postives = 94/207 (45.41%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLGDASHPTPPL-WLDDLQAAGIPH-AWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAHQXXXXXXXXXXXXXXXXXGQPAAAQDLQSEVGTGDPPHXVPLTIQVPRGGQCRATQINYVRGLACQGGRA 825
            LLV  KA+   +AV  L   L     ++L+ NG+G+ + +  Q  Q   +  ++T  A R+ +  ++   +G T +G A        +L D+    +P  AW  +I   LWRKLA+NC  +PLT ++ C NGEL+ H                  G   +A+DL+  V          ++  +      R T+I+Y+ G   +  RA
Sbjct:   67 LLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEEL--QNIQQPLLMGTTTHAARRDGNV-IIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARA 270          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_SALTY (2-dehydropantoate 2-reductase OS=Salmonella typhimurium GN=panE PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 56/206 (27.18%), Postives = 92/206 (44.66%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLGDASHPTPPL-WLDDLQAAGIPH-AWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAHQXXXXXXXXXXXXXXXXXGQPAAAQDLQSEVGTGDPPHXVPLTIQVPRGGQCRATQINYVRGLACQGGR 822
            LLV  KA+   +AV  L   L   + ++L+ NG+G+ + +  Q  Q   +  + T  A R+ +  ++   +G T +G A        +L D+    +P  AW  +I   +WRKLA+NC  +PLT L+ C NGEL+ H                  G   +A DL+  V          ++  +      R T+I+Y+ G   +  R
Sbjct:   67 LLVTLKAWQVSDAVRTLASTLPVTSPILLIHNGMGTIEEL--QNIQQPMLMGTITHAARRDGNI-IIHVANGTTHIGPAREQDGDYSYLADILQGVLPDVAWHNNIRAEMWRKLAVNCVINPLTALWNCPNGELRHHTDEINAICEEVAAVIEREGYHTSADDLRYYVEQVIDSTAENISSMLQDVRAMRHTEIDYITGYLLKRAR 269          
BLAST of EY736172 vs. ExPASy Swiss-Prot
Match: PANE_SALTI (2-dehydropantoate 2-reductase OS=Salmonella typhi GN=panE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 55/206 (26.70%), Postives = 91/206 (44.17%), Query Frame = 1
Query:  211 LLVACKAYDAQEAVAQLEHRLAPHAELILLQNGLGSQDAVAAQLPQARCIFASSTEGAFRESDWRVVFAGHGYTWLGDASHPTPPL-WLDDLQAAGIPH-AWSTDILTRLWRKLALNCAXHPLTVLYQCRNGELQAHQXXXXXXXXXXXXXXXXXGQPAAAQDLQSEVGTGDPPHXVPLTIQVPRGGQCRATQINYVRGLACQGGR 822
            LLV  KA+   +AV  L   L   + ++L+ NG+G+ + +  Q  Q   +  + T  A R+ +  ++   +G T +G A        +L ++    +P  AW  +I   +WRKLA+NC  +PLT L+ C NGEL+ H                  G   +A DL   V          ++  +      R T+I+Y+ G   +  R
Sbjct:   67 LLVTLKAWQVSDAVRTLASTLPVTSPILLIHNGMGTIEEL--QSIQQPMLMGAITHAARRDGNI-IIHVANGTTHIGPAREQDGDYSYLAEILQGVLPDVAWHNNIRAEMWRKLAVNCVINPLTALWNCPNGELRHHTDEINAICEEVAAVIEREGYHTSADDLCYYVEQVIDSTAENISSMLQDVRAMRHTEIDYITGYLLKRAR 269          
The following BLAST results are available for this feature:
BLAST of EY736172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PANE_PSEAE4.470e-6950.54Probable 2-dehydropantoate 2-reductase OS=Pseudomo... [more]
PANE_YERPE3.716e-1535.922-dehydropantoate 2-reductase OS=Yersinia pestis G... [more]
PANE_VIBCH1.081e-1434.562-dehydropantoate 2-reductase OS=Vibrio cholerae G... [more]
PANE_ECO572.409e-1427.542-dehydropantoate 2-reductase OS=Escherichia coli ... [more]
PANE_SHIFL3.146e-1427.542-dehydropantoate 2-reductase OS=Shigella flexneri... [more]
PANE_ECOLI3.146e-1427.542-dehydropantoate 2-reductase OS=Escherichia coli ... [more]
PANE_SALTY1.012e-1227.182-dehydropantoate 2-reductase OS=Salmonella typhim... [more]
PANE_SALTI6.560e-1226.702-dehydropantoate 2-reductase OS=Salmonella typhi ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-G09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736172 ID=EY736172; Name=EY736172; organism=Citrus sinensis; type=EST; length=882bp
ACCTGGCATGTCCTCTGCGCTGGCAGCCTCGGAACATTGTGGGCTGCCCG
CCTGGCCCGCGCCCGGTTGCCGGTGCGCCTGATCCTGCGGGACCACGCGC
GGGTGGCGAGCTATCAGACCGGCAAGGGCCTGACCCTGGTCGAGCACGGC
GTGGCTCACACCTATCCAGTCGTCGGCGAAACATCCGACAGCCCTGGGCC
GATTCATCGCCTGCTGGTGGCGTGCAAAGCCTACGACGCCCAAGAGGCCG
TCGCACAGCTTGAACATCGTCTGGCACCCCACGCCGAGCTGATCCTGCTG
CAAAACGGCCTGGGCAGCCAGGATGCAGTCGCCGCCCAACTGCCCCAAGC
CCGCTGCATCTTCGCCTCCAGCACCGAAGGCGCGTTTCGCGAAAGCGACT
GGCGGGTCGTATTTGCCGGCCATGGCTACACCTGGCTGGGAGATGCGAGC
CACCCTACCCCGCCTCTGTGGCTGGATGACCTGCAAGCCGCCGGCATCCC
CCATGCATGGAGCACCGATATCCTCACCCGCCTGTGGCGCAAACTGGCCC
TGAACTGCGCCATNCACCCGCTGACTGTGCTGTATCAATGCCGCAATGGG
GAACTGCAAGCCCATCAGTGCGAAGTGGCCCACCTGTGCGCCGAACTCGC
CGAACTGCTGGAATGCTGCGGNCAACCCGCCGCCGCGCAGGATTTGCAAA
GCGAAGTGGGAACGGGTGACCCACCCCACNGGGTGCCATTGACCATCCAA
GTACCAAGAGGTGGCCAATGCCGGGCCACCCAAATCAACTACGTCCGGGG
GCTAGCCTGCCAAGGCGGGCGGGCGAGAGGATCCAGCGTGACGTCGGGTG
GTATGGGAGGGTTTAGCTCTTCTTGCAGTCGC
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