EY736170

Overview
NameEY736170
Unique NameEY736170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10828 contig Csv1_Contig10828:248..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736170 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   67 MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV*AAA 321
            M F AG+ +S         SLSP +NQDA+WQMNL ++E ME+GS PERPGEPDCSYYIRTGLCRFG+TCRFNHP +R+LV A A
Sbjct:    1 MDFNAGVPMS---------SLSPLMNQDAMWQMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATA 76          
BLAST of EY736170 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1
Query:  136 SLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV*AAA 321
            ++ Q+A+WQMNLR++E MESG  PE PGEPDCSYYIRTGLCRFGATCRFNHPPNRKL  A A
Sbjct:    5 TIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATA 66          
BLAST of EY736170 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.110e-21
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  115 EGPSLSPSLNQDALWQMNLRTNEAME-SGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV*AAA 321
            E   LSP LNQ+A+WQMNL +++ M   GS PER GEPDC+YYIRTGLCRFG+TCRFNHP +RKLV A A
Sbjct:    9 ESTFLSPLLNQNAMWQMNLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATA 78          
BLAST of EY736170 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.861e-20
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   49 SGDGSRMQFEAGISLSRGAAVTEGPSLSP-----SLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV*AAA 321
            +G G       G   S G      P++ P     +  ++A+WQM L   E+MES   PER GEPDCSYY+RTGLCRFG TC+FNHPPNRKL  AAA
Sbjct:    7 AGGGGGEGDSNGGGTSPGGVSAAAPAIGPHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAA 102          
BLAST of EY736170 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.341e-19
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   52 GDGSRMQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV*AAA 321
            G+GS     A  +    AA T GP +   ++++A+WQMNL   EAME+G  PER GEPDCSYY+RTGLCRFG TC+FNHP +RK+  AAA
Sbjct:   11 GEGSSSSAAAAAA---AAAATIGPHV---VDEEAMWQMNL--GEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAA 92          
BLAST of EY736170 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.273e-16
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  103 AAVTEGPSLSPS-LNQDALWQ-MNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV*AAA 321
            AA T+ PS  P+ L  + +WQ M +  + AM+ G  PER GEPDC+YY+RTGLCRFG +CRFNHP +R L  A+A
Sbjct:   42 AAATDEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASA 116          
The following BLAST results are available for this feature:
BLAST of EY736170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
C3H33_ARATH3.295e-2665.88Zinc finger CCCH domain-containing protein 33 OS=A... [more]
ZFNL_PEA8.973e-2477.42Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H57_ARATH7.110e-2168.57Zinc finger CCCH domain-containing protein 57 OS=A... [more]
C3H66_ORYSJ7.861e-2051.04Zinc finger CCCH domain-containing protein 66 OS=O... [more]
C3H63_ORYSJ1.341e-1955.56Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H12_ORYSJ5.273e-1654.67Zinc finger CCCH domain-containing protein 12 OS=O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-G07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736170 ID=EY736170; Name=EY736170; organism=Citrus sinensis; type=EST; length=835bp
CACGCGTCCGCGGACGCGTGGGTCCGGCGGGAAATGATAGAGTGACAGAG
TGGTGATGGAAGTAGAATGCAGTTCGAAGCCGGAATTTCGTTGTCCCGAG
GGGCTGCTGTCACCGAGGGACCCTCACTGTCACCGTCCTTGAACCAAGAT
GCTTTGTGGCAAATGAACTTGAGAACAAATGAAGCAATGGAATCTGGGTC
CTTGCCTGAGCGTCCTGGGGAGCCGGACTGTTCTTACTACATCAGAACAG
GCCTCTGTAGATTTGGGGCAACATGTCGATTTAATCATCCTCCTAACAGG
AAGCTGGTATAAGCTGCAGCATGTTTTGACAAATATTTGTGAACTCAAGA
GTAAACAAAAGGCAAATGATTATCAGTATCTAGGTTCTTTGTTATATCAA
TGCAAAACCGTTTTTATCTTCAATTAACCTAGCATTGCTCCATATGAATT
ATTCATCAAAAGTTTTTCATTTTCTATATGAAATCAAAATTAGCAATTCT
GCACAGCCCATAATTTTTTTTTTAATGATTTAGCAATTGTTATTTAATGG
TAAGGCATTTACTGTTCTTTGACATGTATTATGCATGTATTTAGTTTTAG
TATTTAATATTTCTTTTTCCCCTCTCTATTGGCAGATGGTATTGAATATT
AGCCTGTCTCTAACTTTTCAAAAGACTAGAATGGAAAGAATGCCATTTTC
TTGCCTGGCATTTGGATTTAACAGCTAATATTCTCAGTTGATATAATCTT
ATTCTTTTCTGTTTTGGGGTTTTACTACGGTCTTTGCTGATTAAGGATGT
TTATTTCTCTTCTTTTCTTTTTCCCTCCTGTTCTC
back to top