EY736115

Overview
NameEY736115
Unique NameEY736115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY736115 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.164e-24
Identity = 71/171 (41.52%), Postives = 87/171 (50.88%), Query Frame = 2 
Query:  251 RLPKLTLSTVLVRASESDKPN----------------------GIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAFG-KTKKETVKDGSEEXXXXXXXXXXXXKGGTPAKFRAIGVVGDNTGQVGV 694
            R+P    +T L+  S S KP                        I F + +NPDE+   F             + DE P E+E+EIA AYEELYG AY+G S+ GNDVY MDSK KK + FG K+KKE ++DG EE            KGG   +FRAI VVGD  GQVGV
Sbjct:   20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEIT-FDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGV 189
[Close]
BLAST of EY736115 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22
Identity = 66/142 (46.48%), Postives = 78/142 (54.93%), Query Frame = 2 
Query:  272 STVLVRASESDKPNGIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAF-GKTKKETVKDGSEEXXXXXXXXXXXXKGGTPAKFRAIGVVGDNTGQVGV 694
            S  LV+AS +D    I F+D         VF              FDE   ETE+EIA A+EELYGPAY+G S+ G D+YVMDSK KK+S   GK KK+ ++DG EE            KGG   KFRAI VVGD  G VGV
Sbjct:   44 SLTLVKASSTDTET-IFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGV 184
The following BLAST results are available for this feature:
BLAST of EY736115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR5_SPIOL5.164e-2441.5230S ribosomal protein S5, chloroplastic OS=Spinaci... [more]
RR5_ARATH1.272e-2246.4830S ribosomal protein S5, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736115 ID=EY736115; Name=EY736115; organism=Citrus sinensis; type=EST; length=827bp
ACGCCCACGCGTCCGCCCACGCGTCCGNGGACGCGTGGGCGGACGCGTGG
GTAAGCAATGCTCCCAAGAGACTGAACTGATCTTCCTTTCTTCTCCACTC
TCCCCCAAACGCAGCGTTACATACACATCACCAATGGCAACAACAGCATC
AGCAACAAGAGCAACCCTTTCTTCTCTCTCGTCATTGTCTTTGTCTCTAT
CTCTTCACCCGACTCCCCGCCTCTCATTCCTCTCCACTGCAAAACTCACC
AGGCTCCCAAAACTCACCCTCTCGACCGTCCTCGTCAGAGCCTCCGAATC
CGACAAACCAAACGGCATCGTTTTCGACGACTTCAACAACCCAGATGAAG
ACGCCGCCGTTTTCGACCCACCGACGCCCCCGGAGGATTACACTCCCCCG
CCCTCCTTCGACGAGCTCCCAATGGAAACCGAGGACGAAATTGCCGCTGC
TTACGAAGAATTGTACGGACCCGCGTACGCGGGAGTCAGCGTCTCGGGGA
ATGATGTTTATGTGATGGACTCGAAGGCGAAAAAGACGAGTGCTTTTGGG
AAAACGAAGAAGGAGACAGTGAAGGATGGGTCTGAAGAAAGAGTGGTTCA
AGTCACAAGAGTGACGAATGTGGTCAAAGGAGGGACACCAGCGAAGTTTA
GAGCTATTGGTGTGGTTGGTGACAACACAGGCCAGGTTGGTGTTTGGCGT
TGCGAGAGCTAAAGAAGTTATTGGAGAGGGGCAGAAATCCGCCGTTGAGT
GTAGGAGGAAATATGTTACTGGCCCTATGACCAAGATACTGGAGTGGCCC
TGACACCCCGCAGGGGACTTTGGGGCG
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