EY736110

Overview
NameEY736110
Unique NameEY736110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736110 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 3
Query:  381 GNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQV 518
            G++ R    YPVRPD++DC+FYM+TG+CK+GS+CKFNHPVRRK Q+
Sbjct:   89 GSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQI 134          
BLAST of EY736110 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 4.597e-12
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  408 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRR 506
            +P RPD  +C FYMKTG CKFG+ CKF+HP  R
Sbjct:  306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKER 338          

HSP 2 Score: 37.3502 bits (85), Expect = 4.597e-12
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  614 QYHHPKNRIPKSPPCTLXRQGLPLRP 691
            ++HHPK RI  +P C L   GLPLRP
Sbjct:  331 KFHHPKERIIPTPNCALSSLGLPLRP 356          
BLAST of EY736110 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.964e-12
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  408 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRR 506
            +P RPD  +C FYMKTG CKFG+ CKF+HP  R
Sbjct:  315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKER 347          

HSP 2 Score: 36.965 bits (84), Expect = 5.964e-12
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  614 QYHHPKNRIPKSPPCTLXRQGLPLRP 691
            ++HHPK R+  +P C L   GLPLRP
Sbjct:  340 KFHHPKERLVPAPNCALNSLGLPLRP 365          
BLAST of EY736110 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 3
Query:  408 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQVIK 524
            YPVRP A+DC+FYM+TG+CKFGS+CKFNHP+ RK Q+ +
Sbjct:  107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIAR 145          
BLAST of EY736110 vs. ExPASy Swiss-Prot
Match: C3H13_ARATH (Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis thaliana GN=At1g48195 PE=4 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 4.110e-11
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  602 KSNWQYHHPKNRIPKSPPCTLXRQGLPLRP 691
            K N +YHHPKN  P  P CTL  +GLPLRP
Sbjct:   27 KQNCKYHHPKNITPSEPQCTLNDKGLPLRP 56          

HSP 2 Score: 42.3578 bits (98), Expect = 4.110e-11
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  408 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHP 497
            +P RP   +C++Y++TG C    NCK++HP
Sbjct:    6 FPERPGEPECSYYLRTGNCYLKQNCKYHHP 35          
The following BLAST results are available for this feature:
BLAST of EY736110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H67_ARATH1.596e-1365.22Zinc finger CCCH domain-containing protein 67 OS=A... [more]
C3H63_ORYSJ4.597e-1263.64Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H66_ORYSJ5.964e-1263.64Zinc finger CCCH domain-containing protein 66 OS=O... [more]
C3H43_ARATH1.494e-1169.23Zinc finger CCCH domain-containing protein 43 OS=A... [more]
C3H13_ARATH4.110e-1163.33Zinc finger CCCH domain-containing protein 13 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736110 ID=EY736110; Name=EY736110; organism=Citrus sinensis; type=EST; length=898bp
CACGCGTCCGATCATTTTCGCTCTTTTGCAAAAGTAGGGTTTTGAAATGT
GATAACAAAATGGAACTCTCTGAGCTAATTTCCGTACCAAATCTTAATCA
TGAAAAAACAAAATTCGAACTAGGGTTACAATCTTCCTCTCCGAAATCCG
ATCTCGATCCTCCACCGTCCGATCTTGATTACACTGCTGGAATTGAGGAA
GAGCTGCGAAATCTCGATTTGAGAGAGGCGGAAGAGATAGATTCAATCAA
AGCAGCGGAAATAGAAATAGTAGTTGAAGAAGAAGACGAAGACGAAGAGG
AAGAGGAAGAAAGCGAGAGTGATGAAAACAATAAAAGTAACATTATAGTT
CAGAATGAGATTCAAAATGAGAATGAGTATGGAAATCAAATGAGAAAAAG
GTATCCCTATCCAGTGAGACCCGACGCTCAAGATTGTACTTTTTATATGA
AAACAGGTACCTGCAAGTTTGGGTCCAATTGTAAGTTTAATCATCCTGTT
CGTAGAAAAAACCAGGTAATAAAAATTAAATTTTAAATTTACCCGATTAG
TTTTTTTGCTTTTGTNTGTTTATTTGTCATTGTTTCTGCTGAGAAACAGC
TAAGTCTAATTGGCAATATCATCATCCAAAAAATCGAATCCCTAAGTCAC
CACCATGCACTCTCANGCGACAGGGTCTGCCACTGCGGCCTGTAAGTTCT
GATTTTCAGCTGTGCTTTTGGGATGATTACTTACTTGGAAAATGAAAATT
TGGATTGGCACCGAATTCTTAGTTACAGAGTGAAAACAAAAACTGCAGTC
TACTGGTAAACAAATCTAAGCTCTTACCAGGGTGGATGGATATTGGACAT
TGTGTTCCCTCAAGGGTGGGGGTAAGGGGTGTGGGGCGTTGAGAAGCG
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